Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0562 ATGGTTCGAGGAAAAGTAGAGATGAAACGAATTGAAAATTCGACAAGTCGTCAAGTGACATTCTCAAAGAGACGAAATGGGCTTTTGAAAAAAGCTTATGAATTGTCTGTTCTTTGTGATGCTGAAGTTTCTGTCATAATTTTCTCCCAAAAAGGAAGGCTCTATGAGTTCTCAAGCTCCGACATGCAAAAGACAATTGAACGTTACCGTAGCTATGGGAAAGATGGACAAACCACCCCTTTTCGATCAGAAGGATATATGCAGCAACTGAAGCAAGAAGCTGACATGACTGCAAAGAAAATCGAGCAACTTGAAAAATCACAAGAGAAGCTTTTGGGACGTGGGTTGGATTCTTGTTCCTTTGAGGAACTTCGAGGGATTGAAAGACAGTTGGTACACAGCTTAACCCGTATTAGAGAAACCAAGGCTCAGCTATTCAAGGAGCAGAAAGAGAAGTTGATTGAAAAGGGGAAACTCCTTTTAGAAGAAAATTTAAAGTTATCTGCAAAGTGTGGTACTAAGCCGTGGCAAGAAGGTGGTTTTGAAGGAGAGGGAGGCATAATGAGTAATTTATGCAGCCAAAGTAGCCAAGGTCCTGACATGCAGACTGAATTGTTCATTGGATTGCCTTGCTCATAA 639 40.85 MVRGKVEMKRIENSTSRQVTFSKRRNGLLKKAYELSVLCDAEVSVIIFSQKGRLYEFSSSDMQKTIERYRSYGKDGQTTPFRSEGYMQQLKQEADMTAKKIEQLEKSQEKLLGRGLDSCSFEELRGIERQLVHSLTRIRETKAQLFKEQKEKLIEKGKLLLEENLKLSAKCGTKPWQEGGFEGEGGIMSNLCSQSSQGPDMQTELFIGLPCS 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5524583 5538837 - CcPI632755_01g005620.1 Cco01g0562 169424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0562 212 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco01g0562 212 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 192 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cco01g0562 212 Coils Coil 87 107 - -
Cco01g0562 212 Pfam K-box region 88 171 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cco01g0562 212 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco01g0562 212 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco01g0562 212 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cco01g0562 212 SUPERFAMILY SRF-like 3 78 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco01g0562 212 FunFam Agamous-like MADS-box protein AGL13 13 77 - -
Cco01g0562 212 Gene3D - 13 108 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco01g0562 212 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco01g0562 212 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco01g0562 212 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco01g0562 212 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cco01g0562 212 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0562 Cco-Chr1:5524583 Cco06g0024 Cco-Chr6:245863 5.50E-45 dispersed
Cco01g0562 Cco-Chr1:5524583 Cco05g0928 Cco-Chr5:8103875 2.10E-52 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58579 PF01486 K-box 2.80E-20 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0562 - - - 0.0