Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0565 ATGTCTTCTACTCAAATTCTCTCTCTCCCTCTCACTCTTAAGCCTTCTCATTTCCCAAATCACACTCTCAAACTTCCCAATTCCTCTCTCTCCCTGCTCCGCCCATCAACTTCCTTCGCGCCATTTTCGACTCCACCACCTCTCAAGCCCTTTAATGGTTCAATCAAAACTAGTAGCAATTCTACTTTCGCCTATGTCACGGGCCCTGCGTCGGACCCTAATGTCAGCGAGTCTGACCCCAAGGTGGACGACGCCTCCGATTCTCAGGTTCGGGTTGTTGGGGTCTTGAATTGGGGGCTCTTCTGGAGGCTTTTGACCAAGCATAAGCTACGGCTTCTAGTTTCTTTGCTTACTCTTGTTTGCTGCACTACTTGTACTCTTTCAATGCCCTTTTTCTCTGGTAGATTTTTTGAGGTACTTATAGGTGCGAAACCTGGGTCTCTGTGGAGGCTTCTGAGTACGGTTGGAATTTTATATGCATTGGAGCCAATATTGACGGTTTTATTTGTCACAAACATGAATTTCATGTGGGAGAAGGTTATGTCAAGATTAAGAGCCCAGATTTTTGGAAGGTTGCTGATTCAGAAGGTGGAATTCTTTGACAGATACAAGGTTGGTGAAATTACCGGATTGTTAACTTCTGATTTGGGATCTCTTAAGGATGTGAGGCAAGCAACTCTTCACCAAGTACAAGTGATTGGAACAATATGTATATTATTTGCTTTGTCCCCCCAGCTTGCACCTATTCTTGGCCTGCTGATGCTTACAGTATCTGTTTCAGTGGCTGTATACAAGCGATCAACTATTCCTGTATTTAAAGCACATGGATTAGCCCAAGCATCCATGGCTGATTGTGCAACTGAGACATTCTCTGCAATTCGTACTGTGAGATCCTTTGGCGGTGAAAAGCGTCAAATGTTCAATTTTGGTCGTCAGGTTATTGCATATGAGGGTAGTGGCATATCACTTGGGACTTATAAATCTCTGAATGAATCTTTAACTAGAGTTGCTGTTTATGTTTCGCTTATGACATTATATTGGCTTGGAGGAGACAAAGTGAAAGCGGGTGAACTTTCTGTTGGAACCATGGCTTCTTTTATTGGATATACTTTCACGTTAACATTTGCTGTTCAAGGATTGGTAAATTCATTTGGAGATCTCCGCCGAACTTTTGCTGCTGTTGAAAGAATTAATTCTGTTTTAAATGAAAAGGTTGATGAAGCCCTTGCATATGGGTTAGAAAAAGAGATGCAACAAAAAGAATTTAGATATAAGTTGCTATTCTCCAGCGATACTGATGAAAATAGTCAAGTGAAAACACAGTACATGGCAGCCCTAAAATCTTCTAGCAACGTTATCGATCTTGCTTGGTCTGGTGATATTTGTCTTGAAGATGTGTGCTTTTCTTATCCTTTGAGACCGGACGTTGACATTCTTAGCAGTTTGAATTTAACCCTTAAATGTGGAACCATAACGGCGCTAGTGGGCCCTAGTGGAGCAGGAAAGAGTACAATAGTGCAGCTATTGGCACGTTTTTATGAGCCAAAGAAAGGGCAGATAAAAGTTTCTGGTGAAGATATTCGAGCATTTGACAAGAGAGAATGGGCTCGGGCTGTTTCAATAGTGAATCAAGAACCCATTCTTTTTTCGGTGTCTGTTGGAGAGAATATTGCATATGGACTTCCAGATGATAACGTAACAAAGGATGAAGTTATAAAGGCAGCCAAAGCTGCAAATGCTCATGACTTCATTATTTCACTTCCTCAGGGCTATGACACACCAGTTGGTGAACGCGGAGGCCTTCTCAGTGGTGGCCAGCGACAGAGAATTACAATTGCGAGAGCTTTGCTTAAGAATGCTCCAATCCTTATACTTGATGAGGCAACCAGTGCCCTAGATGCAGTTAGTGAGCGACTGGTCCAGGACGCTCTAAACCATCTAATGAAGGGAAGGACAACATTGGTGATTGCACACCGATTGAGTACCGTTCAAAATGCCCATCAAATTGCATTTTGTTCTGATGGAAAAATTGTAGAGCTGGGAACTCATTTGGAACTACTGGCTCGGAAAGGTCGGTATGCTTCATTAGTTAGCACACAAAGACTGGCATTTGAGTAA 2118 42.54 MSSTQILSLPLTLKPSHFPNHTLKLPNSSLSLLRPSTSFAPFSTPPPLKPFNGSIKTSSNSTFAYVTGPASDPNVSESDPKVDDASDSQVRVVGVLNWGLFWRLLTKHKLRLLVSLLTLVCCTTCTLSMPFFSGRFFEVLIGAKPGSLWRLLSTVGILYALEPILTVLFVTNMNFMWEKVMSRLRAQIFGRLLIQKVEFFDRYKVGEITGLLTSDLGSLKDVRQATLHQVQVIGTICILFALSPQLAPILGLLMLTVSVSVAVYKRSTIPVFKAHGLAQASMADCATETFSAIRTVRSFGGEKRQMFNFGRQVIAYEGSGISLGTYKSLNESLTRVAVYVSLMTLYWLGGDKVKAGELSVGTMASFIGYTFTLTFAVQGLVNSFGDLRRTFAAVERINSVLNEKVDEALAYGLEKEMQQKEFRYKLLFSSDTDENSQVKTQYMAALKSSSNVIDLAWSGDICLEDVCFSYPLRPDVDILSSLNLTLKCGTITALVGPSGAGKSTIVQLLARFYEPKKGQIKVSGEDIRAFDKREWARAVSIVNQEPILFSVSVGENIAYGLPDDNVTKDEVIKAAKAANAHDFIISLPQGYDTPVGERGGLLSGGQRQRITIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIAFCSDGKIVELGTHLELLARKGRYASLVSTQRLAFE 705
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5574126 5581203 + CcPI632755_01g005650.1 Cco01g0565 169427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0565 705 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 113 389 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cco01g0565 705 CDD ABC_MTABC3_MDL1_MDL2 461 700 - -
Cco01g0565 705 Pfam ABC transporter 479 630 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cco01g0565 705 SUPERFAMILY ABC transporter transmembrane region 101 406 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cco01g0565 705 CDD ABC_6TM_TAP_ABCB8_10_like 120 397 - -
Cco01g0565 705 FunFam ATP-binding cassette sub-family B member 8, mitochondrial 459 703 - -
Cco01g0565 705 ProSitePatterns ABC transporters family signature. 602 616 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Cco01g0565 705 SMART AAA_5 488 682 IPR003593 GO:0016887(InterPro)
Cco01g0565 705 Pfam ABC transporter transmembrane region 112 376 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cco01g0565 705 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 461 699 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cco01g0565 705 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 93 701 IPR039421 GO:0005743(PANTHER)|GO:0015421(PANTHER)|GO:0090374(PANTHER)
Cco01g0565 705 Gene3D ABC transporter type 1, transmembrane domain 97 407 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cco01g0565 705 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 453 700 IPR027417 -
Cco01g0565 705 Gene3D - 459 702 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0565 Cco-Chr1:5574126 Cco01g1755 Cco-Chr1:30329720 5.30E-84 dispersed
Cco01g0565 Cco-Chr1:5574126 Cco10g1994 Cco-Chr10:33466359 7.40E-70 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0565 K05657 - csv:101211598 1208.36