Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0590 GAAGCGAAGGCTTTAGCTTCCATTACTTGTCTGGTTTCAGCCTCTTTTCCGCTTTTCAAGGGTCTTCTGCATATTGTTGAAATAGCAACCAGGATCGCAGATCACACGCACATTGCAATCTGGTGGTTAAGAACTTTGAAGAGACTGGCTTTAGAGAGTTACTTGGACGCTGGCCACCAAGGATTGGTGCCCCCAATGGCAGCTTCTCGGGTGGCTGGAGGATTAGCGCAATCTTCCTCAAGTTCTGGGATTTTTTTCCAAGGAGATGGGCAGTCCAAGGCTACTGTTAAATCTCACTTGGGCTCATCTTATGGAAACTCATCAAATTCAATTCTAGGAACTGGCCATTCAAATTTGGGTCCAGTTTCTGGGGACACAAATGGTATGTTTAATAGTGTGGCAAACTCAGGACCAAGTGTTGGGGCAAGTTCTCTGGTTACAGATGCAAACTCTGCACTTTCAGGTGGGCCTCACTTGCAGAGAAGTCCAAGCATGAATGCAGAATCATACATGCGATTACCTACATCGCCTATGTCTTTTACATCAAATAACATGAGTATCTCAGGTGCATCACTCATTGATGCATCTTCTGTACTGCAGCACAGTTCTCAGCAGGATCATAATGCTTCCCAATTGCCACAGAACCAGCAACAGGCCCGACAAGTTTCTTCAGGTGATGCGTTACTGTCTAATTCACAAACTGTCCAAGCTTCACTCCCCATGGGTGCACGTGTCTCTGGATCTCTCATGACAGATCCCAATAGTTATTCTCAGTCACAGAAGAAACCACGCTTGGATATTAAGCAGGATGATTTTCTGCAACAGCAGGTACTACAACAGCTACTGCAGAGACAAGATTCCATGCAATTGCAAGGTCGTAATACACCTCAGTTACAAGCAGCATTATTTCAGCAGCAACAGAGATTACGACAACAGCAACAAATTTTTCAGTCTTTACCTCCCTTGCAGAGAGCTCATATGCAGCAGCAGCAGCAGATACAGTTGAGGCAGCAACTTCAGCAACAGGCAATACAGCCTGTAAATGCTATGAAGCGGCCTCATGATGGTGGTGTGTGTGCTCGGCGGCTAATGCAGTACCTATACCATCAGCGTCAAAGGCCTGCTGATAATAGTATTGCCTATTGGAGGAAGTTCGTGACTGAATATTATTCCCCTCGTGCAAAGAAAAGATGGTGTTTGTCATTATATAACAATGTTGGGCATCATGCACTTGGTGTCTTCCCTCAAGCAGCCATGGATGCATGGCAGTGTGACATTTGTGGTTCAAAATCAGGACGGGGATTTGAGGCTTCCTTTGAAGTGCTTCCTAGGCTTAATGAGATCAAATTTGGCAGTGGAGTCATTGATGAGCTATTGTTCTTGGATATGCCACGGGAATTCAGATATTCATCTGGAATCATGATGTTAGAATATGGAAAAGCAGTTCAAGAGAGTGTATATGAGCAACTTCGTGTTGTTCGTGAGGGACAGCTTCGTATCATATTTACTCATGAATTGAAGATATTGGCATGGGAATTTTGTGCAAGACGCCATGAAGAACTTCTTCCACGTAGACTGGTTGCACCTCAGGTGAATCAGTTGGTCCAGGTGGCACAGAAATGCCAGAGCACTATTGCTGAAGGAGGATCTGATGGGGCTTCTCAGCAGGATTTACAAGCAAATAGTAATATGGTTTTGACAGCTGGGCAGCAGCTTGCCAAGAGTCTGGAGTTGCAGTCACTGAATGATTTGGGGTTCTCTAAAAGATACGTCAGATGCTTGCAGATATCAGAGGTTGTCAATAGCATGAAAGATTTGATTGATTTCTGTAGGGAGCAGAAAACCGGACCAGTTGAGGGTCTGAAAAGTTATCCTCAGCACGCCACAGCCAAGCTGCAGATGCAAAAAATGCAAGAGATTGAGCAGGTTGCTACTGCTCAGAGTCTGCCGACCGACCGTAACACCCTTAATCGAATGGTCGCGCTGCATCCTGGGCTGAACAACCAAATGAATAGCCCAAGTCAACTAGTCGGCAGAGGAACTTTGAGTGGTTCAGCACAAGCTGCGTTGGCATTGTCTAACTACCAGAATCTGCTAATGAGACAGAACTCCATGAATTCAACAAGTTCAAACCCACTCCAGCAGGAGACATCATCGTCATTCAATAACTCAAACCAGAGTCCTTCATCAAGCTTTCCTGGAACAACTGCTATAGCATCGGCACCGATGCAGAACTTGCCCAGCAGTGGTCTTTCAAGTCCTAATCTGCCTCAGCAGCAATCTCAAGTTCAACAGCAACTGCATCAGCGCCCAAACACCAACAACTTACTCGTGCAACATCATCCTCAGAGTACGCAAGGTAACAGTAACAATAACCAGGCTATGCAACATCAGATGATCCAGCAACTACTCCAGATATCTAATAACAGTGGGGGAGGACAACAGCAACCACTTTCTGGATCAAACACAAAAGCAAGCATTGCCGGAGCTTATACGGGATACGGAGGCAGCTCTTCTGTGGCGGCTGCAGGCACAGCCAATGCATCTGGTAGTAATACGCCTGCTCCAAGCCGAAGCAACAGTTTCAAAAGTGCTTCAACTGGTGACGTATCAGCAGCCGGTGCTCGTAGCAGTGGGTTCAACCAAAGAAGTGCAGATTTGGCACAAAATCTTCATTTGGATGAGGATATAATGCAGGATATAGCCCATGATTTTACAGATAATGGGTTTTTTAACAGTGATCTTGATGATAATATGTGCTTCACCTGGAAAGGTCAACTAACATAA 2787 45.46 EAKALASITCLVSASFPLFKGLLHIVEIATRIADHTHIAIWWLRTLKRLALESYLDAGHQGLVPPMAASRVAGGLAQSSSSSGIFFQGDGQSKATVKSHLGSSYGNSSNSILGTGHSNLGPVSGDTNGMFNSVANSGPSVGASSLVTDANSALSGGPHLQRSPSMNAESYMRLPTSPMSFTSNNMSISGASLIDASSVLQHSSQQDHNASQLPQNQQQARQVSSGDALLSNSQTVQASLPMGARVSGSLMTDPNSYSQSQKKPRLDIKQDDFLQQQVLQQLLQRQDSMQLQGRNTPQLQAALFQQQQRLRQQQQIFQSLPPLQRAHMQQQQQIQLRQQLQQQAIQPVNAMKRPHDGGVCARRLMQYLYHQRQRPADNSIAYWRKFVTEYYSPRAKKRWCLSLYNNVGHHALGVFPQAAMDAWQCDICGSKSGRGFEASFEVLPRLNEIKFGSGVIDELLFLDMPREFRYSSGIMMLEYGKAVQESVYEQLRVVREGQLRIIFTHELKILAWEFCARRHEELLPRRLVAPQVNQLVQVAQKCQSTIAEGGSDGASQQDLQANSNMVLTAGQQLAKSLELQSLNDLGFSKRYVRCLQISEVVNSMKDLIDFCREQKTGPVEGLKSYPQHATAKLQMQKMQEIEQVATAQSLPTDRNTLNRMVALHPGLNNQMNSPSQLVGRGTLSGSAQAALALSNYQNLLMRQNSMNSTSSNPLQQETSSSFNNSNQSPSSSFPGTTAIASAPMQNLPSSGLSSPNLPQQQSQVQQQLHQRPNTNNLLVQHHPQSTQGNSNNNQAMQHQMIQQLLQISNNSGGGQQQPLSGSNTKASIAGAYTGYGGSSSVAAAGTANASGSNTPAPSRSNSFKSASTGDVSAAGARSSGFNQRSADLAQNLHLDEDIMQDIAHDFTDNGFFNSDLDDNMCFTWKGQLT 928
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5807307 5821071 - CcPI632755_01g005900.1 Cco01g0590 169452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0590 928 MobiDBLite consensus disorder prediction 704 769 - -
Cco01g0590 928 MobiDBLite consensus disorder prediction 844 879 - -
Cco01g0590 928 Pfam LIM-domain binding protein 362 622 IPR029005 -
Cco01g0590 928 MobiDBLite consensus disorder prediction 244 264 - -
Cco01g0590 928 MobiDBLite consensus disorder prediction 248 262 - -
Cco01g0590 928 PANTHER LIM DOMAIN-BINDING PROTEIN 80 914 IPR029005 GO:0000122(PANTHER)|GO:0005634(PANTHER)|GO:0005667(PANTHER)|GO:0045944(PANTHER)
Cco01g0590 928 MobiDBLite consensus disorder prediction 198 227 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0590 Cco-Chr1:5807307 Cco05g0946 Cco-Chr5:8290762 1.60E-266 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0590 - - - 0.0