Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0592 ATGGATTTTTCCGATTCCTTTTCTTCCTCCCAACTTTGCCACCGCTCCAATCACTCCGACGAGGAGCTTCTTTTGGCGTCCCGATATCCGAAGAAGAGAGCTGGCAGAAAGAAGTTTAAGGAAACTCGCCACCCTATCTTCCGTGGGGTGCGACAGCGGAACTCCGGCAAGTGGGTTTGTGAAGTCAGAGAGCCCAATAAGAAGACTAGGATTTGGCTTGGCACTTTCCCCACTGCTGAGATGGCTGCTCGCGCTCACGATGTTGCTGCCATCGCTCTCCGTGGCCGCTCTGCTTGTCTTAATTTTGCTGACTCTGCCTCCACGCTTCCCGTTCCGGCTACTGTCGATCCTAAGGATATACAGAGGGCTGCGGCTCAGGCTGCAGATGCCTTCCGCCCTCCCGAGGATCAATTGAGGCCTGCCGTGGTGGCGGCGGAGGAGGAAGAGGTGTTTTATTTGGATGAGGAGGCATTGTTTGGGATGCCGGGGTTGCTGGCGGATATGGCGGAGGCAATGCTGTTGCCGCCGCCCAATTGTGCGGGGAACGACAATGACGACTATGGGGTTAATTCTATGGATTTCGATGCCGACATGTCGTTGTGGAGTTACTCAATTTGA 618 54.53 MDFSDSFSSSQLCHRSNHSDEELLLASRYPKKRAGRKKFKETRHPIFRGVRQRNSGKWVCEVREPNKKTRIWLGTFPTAEMAARAHDVAAIALRGRSACLNFADSASTLPVPATVDPKDIQRAAAQAADAFRPPEDQLRPAVVAAEEEEVFYLDEEALFGMPGLLADMAEAMLLPPPNCAGNDNDDYGVNSMDFDADMSLWSYSI 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5879444 5880061 + CcPI632755_01g005920.1 Cco01g0592 169454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0592 205 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 5 203 IPR045277 GO:0003700(InterPro)
Cco01g0592 205 CDD AP2 45 105 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco01g0592 205 Gene3D AP2/ERF domain 46 104 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco01g0592 205 PRINTS Ethylene responsive element binding protein signature 69 85 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco01g0592 205 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco01g0592 205 Pfam AP2 domain 46 95 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco01g0592 205 SUPERFAMILY DNA-binding domain 46 105 IPR016177 GO:0003677(InterPro)
Cco01g0592 205 FunFam Ethylene-responsive transcription factor 2 45 104 - -
Cco01g0592 205 ProSiteProfiles AP2/ERF domain profile. 46 103 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco01g0592 205 SMART rav1_2 46 109 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0321 Cco-Chr1:3140559 Cco01g0592 Cco-Chr1:5879444 1.70E-55 dispersed
Cco01g0592 Cco-Chr1:5879444 Cco10g1916 Cco-Chr10:32766924 6.10E-33 dispersed
Cco01g0592 Cco-Chr1:5879444 Cco05g0938 Cco-Chr5:8185884 8.70E-64 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58580 PF00847 AP2 7.60E-15 CL0081 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0592 - - - 0.0