Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0601 ATGGCTTCAGATACTGGTTCCAGGGCGAGTTCAGCTGCCGATTCGTACATTGGAAGCTTGATAAGTTTGACTTCCAAGAGTGAAATTAGATACGAAGGCGTACTGTACAACATCAACACCGAAGAGTCCAGTATTGGACTAAGAAACGTGAGATCTTTTGGAACAGAAGGAAGAAAAAAGGATGGCCCCCAAGTCCCTCCAAGTGATAAAGTTTTTGAGTACATCTTATTCCGTGGAAGTGATATCAAGGATTTGCAGGTTAAATCGTCTCCACCTGTTCAGCCGGCAGCTCCTATAAATAATGATCCAGCAATCATTCAATCTCACTATCCCCCATCAGTTTCCACATCTACCAGCATGCATTCTGCTGTCAGTGGGTCATTACCTGATCATACTTCCCACACAGCATTTGGATTCCCTCAGTCTAATTTTCAAGGTGGTTTGCCTCCATATCAACCTGGAGGCAACTTGGGGTCGTGGGGAGCTTCTCCTCCGCCTCCTCCAAGTGCAAATGGCAGTGGACTGGCGATGCCCATGTATTGGCAAGGGTATTATGGCCCACCAAATGGGCTTCCTCAGTTACACCAGCAGTCGATTATACGACCTCCTCCTGGTCTGTCAATACCTCCATCTTTGCAACAGGCAATGCAGTATCCTAACATTAATGCGTCTTTACCCACTGGAGCTCCAAAACAACCTGAAGTTCCATCTCCCTTGCTCTCTGGTAGTAATAGTTCTCCTAACTTGACCTCCACTGTTGTGCCCCCTCCAACTTTTTCAACAGCTTTGCCTATGTTCCCTTTTACTTCTATTTCTGAAACGTTACCAAGTTCAGCTGCTAATAAGACAGCTGTTCCTACCCTTCCTGGAGCCCCAGTTAGTGTTAGTTTGCCAGTAGGTCCAATACTGTCTTCATTTTCTGTTGCAGATGTTAGTTCTGCCATACCACCAATCTCTAATGAACCTAATACAGTTTCTGGTCCCTCATTACTGTATCAAACTGTGTCTCAGTCAACTTCATCTGTAGTTGGAATATCCAACTCTCGCGCTGAATCCTCTGTACCTTCTCTAGTTACCCCTGGGCAGCTGTTGCAGTCTGGGCCTGCTGCTGTGGTTTCATCTCAATCCTCACATACAGTGCATAAGGATGTGGAAGTGGTCCAATCATCATCGTTAGAACCTTCTAAGCCAGTGACAACAGAGGCCCAGCCACCAATACTACCACTACCTGTACTTTCAAGGCCTGTCCAGAAGGCCAATGGTGCTCATTTTCAGGCTCGCCATTTTTACAGAGGACGTGAAAGAGGAAGAGGATCTGGGTTCTATGGAGGTTTCTACTTTACTTTTGCTCATGGGGGATGCACACATTGGTCTGGGGAGGAGGGACCTTCGTTTTTAGACCCCTGCCCTTCCCAGGTTTTTTCTACTAGCTCTCTTTTTTCACCTTCTGTGTGTTCTCTTTCTCCCCCGTCATCTCCTTTTTCCTCACGGATGTTAGGATTCCAAAGAAGGTACAGCTCTTGCACTTTGCCTGACAGTGGTGAATTGGACAGAGGTCCGAGGACCACAACCATATTCTTTGAAGTTGCAAGTTTGCTTAGTCGATTTGGACCCCTTTCATGGCAGAGTTCCCGACCTGTGACCAAATTTACGGAAGATTTTGATTTCATAGCTATGAACGAGAAATTCAACAAGGATGAAGTATGGGGAAATCTAGGTAAAGGTAATAAATCTCATCTCAAGGATAAGGATGTGGATGGAAAGGTCAGTGATGAAGATGACGTTGAAGAAGAAGATGAAGGTGAACTCTCACAGTCTGGGATTAAGCCCTTGTATAACAAGGATGACTTCTTTGATTCACTCTCTTACAATGCTGTTGATAATGATCCTCAAAATGGGCGGACGAGATATTCAGAGCAAGTAAAGATAGACACAGAGACTTTTGGTGATTTTCCGAGGTATCGAGGGGGCCGAGGTGGGCGAGGTCCTGGACGTGGAGGGTACTTCCGTGGAGGATATCATGGAAGAGGATATGGCTATAATGGGAGGGGTCGGGGGCGGGGTCAAGGACGCTCATCATTTTATCGTTCATAA 2094 46.08 MASDTGSRASSAADSYIGSLISLTSKSEIRYEGVLYNINTEESSIGLRNVRSFGTEGRKKDGPQVPPSDKVFEYILFRGSDIKDLQVKSSPPVQPAAPINNDPAIIQSHYPPSVSTSTSMHSAVSGSLPDHTSHTAFGFPQSNFQGGLPPYQPGGNLGSWGASPPPPPSANGSGLAMPMYWQGYYGPPNGLPQLHQQSIIRPPPGLSIPPSLQQAMQYPNINASLPTGAPKQPEVPSPLLSGSNSSPNLTSTVVPPPTFSTALPMFPFTSISETLPSSAANKTAVPTLPGAPVSVSLPVGPILSSFSVADVSSAIPPISNEPNTVSGPSLLYQTVSQSTSSVVGISNSRAESSVPSLVTPGQLLQSGPAAVVSSQSSHTVHKDVEVVQSSSLEPSKPVTTEAQPPILPLPVLSRPVQKANGAHFQARHFYRGRERGRGSGFYGGFYFTFAHGGCTHWSGEEGPSFLDPCPSQVFSTSSLFSPSVCSLSPPSSPFSSRMLGFQRRYSSCTLPDSGELDRGPRTTTIFFEVASLLSRFGPLSWQSSRPVTKFTEDFDFIAMNEKFNKDEVWGNLGKGNKSHLKDKDVDGKVSDEDDVEEEDEGELSQSGIKPLYNKDDFFDSLSYNAVDNDPQNGRTRYSEQVKIDTETFGDFPRYRGGRGGRGPGRGGYFRGGYHGRGYGYNGRGRGRGQGRSSFYRS 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6011709 6017767 - CcPI632755_01g006010.1 Cco01g0601 169463

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0601 697 SMART FDF_2 548 652 IPR019050 -
Cco01g0601 697 CDD LSm14_N 13 87 IPR025609 -
Cco01g0601 697 SUPERFAMILY Sm-like ribonucleoproteins 15 92 IPR010920 -
Cco01g0601 697 SMART LSM14_2 10 110 IPR025609 -
Cco01g0601 697 MobiDBLite consensus disorder prediction 221 252 - -
Cco01g0601 697 Pfam FDF domain 549 650 IPR019050 -
Cco01g0601 697 ProSiteProfiles FFD box profile. 610 625 IPR025761 -
Cco01g0601 697 ProSiteProfiles DFDF domain profile. 542 578 IPR025762 -
Cco01g0601 697 MobiDBLite consensus disorder prediction 110 149 - -
Cco01g0601 697 Gene3D - 6 92 - -
Cco01g0601 697 MobiDBLite consensus disorder prediction 648 697 - -
Cco01g0601 697 MobiDBLite consensus disorder prediction 110 171 - -
Cco01g0601 697 FunFam Trailer hitch, isoform C 10 92 - -
Cco01g0601 697 MobiDBLite consensus disorder prediction 574 611 - -
Cco01g0601 697 MobiDBLite consensus disorder prediction 387 406 - -
Cco01g0601 697 ProSiteProfiles Sm domain profile. 8 91 IPR047575 GO:0003723(InterPro)
Cco01g0601 697 Pfam Scd6-like Sm domain 16 89 IPR025609 -
Cco01g0601 697 ProSiteProfiles TFG box profile. 632 652 IPR025768 -
Cco01g0601 697 MobiDBLite consensus disorder prediction 237 252 - -
Cco01g0601 697 PANTHER SCD6 PROTEIN-RELATED 13 440 - GO:0000932(PANTHER)|GO:0003729(PANTHER)|GO:0033962(PANTHER)|GO:0034063(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0601 K18749 - - csv:101215778 731.865
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0601 Cco-Chr1:6011709 Cco05g2578 Cco-Chr5:34027209 1.30E-151 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g247 Blo01g00476 . . . . . Bma14g01693 . Cmo04g01615 Cmo18g01071 . . Car04g01593 . Sed06g1855 Cpe09g00267 Cpe01g01755 Bhi07g01381 Tan04g0909 Cmetu10g0348 Lac13g0448 Hepe10g1862 . . Cla05g02337 Cam05g2511 Cec05g2535 Cco05g2578 Clacu05g2505 Cmu05g2367 Cre05g2484 Cone13ag0863 Cone19ag0863 . . Lsi04g00298 Csa05g02074 . Cme10g00301 . Blo11g00828 . . Bpe11g01686 . . . . . . Cma04g01995 . . Car15g01281 Cpe13g00029 . Bhi12g00822 . . . . . Lcy10g0875 Cla01g00562 Cam01g0585 Cec01g0577 Cco01g0601 Clacu01g0580 Cmu01g0551 Cre09g1956 Lsi09g00611 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001922 1 2 3 2 2 2 4 2 2 2 2 2 3 2 2 4 2 2 4 2 2 2 2 2 2 2 1 2 3 1 66