Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0602 ATGTTCACGCCTCAGAGGACGGGGTGGCCTGCTGTATCCCTCACACCTCGAACCGAACCTAAACTTGCACTTTCCAATTCCATTCTTGTGGGGAAAGGCAAGGATGTGACTTTTACAGGCGGCCCACCGCCGCCGTTGGGGTCTCTGAACGACGAATTGTATAAAACCTCCACGGCGGTGGATACTGGGGACATGGATGATTGGAGGAAGTTTAAGAAGGCGGGGTTGTTGGACGCGGCCGCAATGGAGCGCAAGGATCGGGAAGCGCTTCTCGAGAAGGCTTCAAGGCTTCAAAGCGAGCTTTTTGATTATCAGCACAATTTAGGACTTCTTTTGATAGAGAAGAAAGATTGGGCTTCAAAGTATGACCAATTAGGGCAAGATTTAGCAGAAACTGAGGAGATCTTCAACCGCGAACAATCAGCACATTTAATTGCATTATCTGAAGTTGAAACGAGGAGGGATAACTTGAAGAAAGCTCTAGCTGCTGAGAGGCAACATGTTTCTAGTCTTAAACAGGCTTTATGTGAAGTAAGTGAGGAGCGTGCAGAAATCAAGCTTACGTCTCAGAAGAAGTTGGCTGATGCAAATGCTTTGATGCATGGAATTGAGGAGAAATCTTTGGAGTTGCAGAAAAAGTTGAATGCCGCTGAAGCCAAGCTTGCTGAGGTAAATAGGAAGAGTTCAGAGTTGGAGATGCGAATGCATGAAGTTGAAGCTCGTGAAAGTGTGCTTCAAACTGAGCAGATATCCTTAGTCACGGGGAAAGAGGCACATCAGGCGACCTCCCATAAAGAAAGAGAAAGCTTACGTAAGTTGCAGCAGAAGTTGCAGGAATGGGAAGAAAGACTGAGCAAGAATCGTGAATTGCTTAATGATAAAGAGCAGAAGGTAAATGAAAATAGCACGACTATGAAGCAGAAAGAGAAGGATCTTGAAGAGATGAAGAAGAAGATTGATCTGTCAAGTTCAGTCCTGAAAAGGAAGGAAGATAATGTAAATAGACGATTAGCAGATGTGGAAGCAAAAGAGAAGGAAGCTGATTTTTCAAGAAGTCTCTTAGAGAAAAAACAAGAAGAATTACATCAGATGGAAGAAAACCTTCGTGGGAGAGAAAAGATGGAGATCGAGCAGCTGCTTGACGAGCAAAGAGTAATTCTACAGAAGAAGAAAGAAGAGTTTGAGTTACAATTGGAAGAAAAGCGGCAGTCTCTGGATAATGAAGGTAGTACAAGGATAGGAGCAATCAAAAGGAAGGATCTTGAAACTAATCATGAGAAAGAAAAGTTGGTGAAGCAAGAGCAAGCCTTGGAGAAAAAGATGCTTCGAGCAAAGGAGAAAGAGGGTGAGCTTGAACAAAAGATAAAGACGTTGAAATCAAAAGATAAGATCTTGAAAGCTGATGAGAGAAAGCTGGAGGTGGAAAGGTTGCAAATGCTAGCTGATAGAGAGAGCTTACAGTCTCTCATTAATGAGATTGAGGAAATCAGGACCAAAAATTCTCAGAAGGAGCGGCAATTTCATGAGGAGAGGGAGAAATTGCAGGTGATGAAAGAAGAGAGATCAGAGCACATTCGTTTACAGTGTCAATTGATGCAGGAAATTGAGAGTTACAGGCTTCAGAACAAAATAGTTACGAAAGAACATGAGGATCTTAAGCAGGAAAGGGTCAAATTTGAGAGAGACTGGGAAGCCTTAGATGAAAAAAGGGCTGAAATACACAATGAACTTAGAGATCTTGTGGAGGAGAGGAAGAAATTAGAGATCTTGCAAGGGACAGAGGAGGAAAGGTTGAGAAATGAGAAAAATGAGATGCTAATTTATATGCAGAGGGAGTTGGAGAATGTCAAACAAGAAAAGGAATTATTTGCCTCAACTACGAGGCATGAGCAGCAAGCCTTGTCTGAGCAAGCTCAAAATAAGCATAATCAACTACTTCAAGATATAGAATTTCAAAGAAAAGATCTTGAAAGTCGCTTGCAGAATAGCCAGATGGAACTAGCAAAAATACGGCAGGAAAGGGAGCTATCATTTGAAGAGGAGAGAGAGAGAGAACGGAATGAATTGTTTTGCTTGAGAGAGATTGCTCAGAAAGAAACAGAAGAGTTATTGTCTGAGAGGCATCGATTGGAAAAGGAAAAGGAGGTGGTTTCCCTGAATAGGAAGCAATTGATAGCAGACCATATTGAAATTCGTCAAGATATTGATAAGCTCAACATATTAAGTAAGGAGCTTAAAATTCAGAGAGAACAACTTATCCAGGATAGGGTTCGCTTTTTGACCTTTGTTGATAAGCATAAGAGTTGTGGGAAGTGTGGTGTGTCCATTGAGGAATTTATAGTTCCTAACCTCCAAATACCTGAAGAAATCAGAGAATCACACCCTCTAGCAAATTTAGATGCCGATTCTCTACAAAATCTCCAAAGAGAATTTGCTGCTTCAGAGTTTGGTTCTTCAGATTCTGGAGGTCGCATGTCTTGGCTCAGAAGATGCAGCAGAAAGATTTTGAATCTATCTCCTATTAAGAAAATTGGACATGTAATTCCTCCTGTTTCTGGGAAGTTGGCTGCAGATTGTACTGATTTAGAAGCCAAGGAGCCTAATGTCAATGTTGGCAATGTGAAAAGGTCTGGTATTGCTTATGAACCACAAGAATCTTGTTTTAATGAGAATGAATCATCTGATGTTGAAAGACTTTCATTCAGTGATAACATCAGAGTAGCGGAGGATAGACATGCAAACACGTTCGGTGATTTTAGCAATTTAGACGGCAAGTTTGAAAAAGCTTCAGAAGCTTCAAAACAACGGGACATGAAGAGGGAGAGGCAGAAACATGAGAAAGGACTTAAGTCTGGTCATAGAACACGTTCAGTGAAGGCAACTGTTCAAGATGCAAAAAATTTTCTTGGGGAGACTGCGGGACAGTCAGATCTTAATGTACCTGTACAGAAAAGTGATTTGAATTCTTTAAACGAAGGAATTAGCAATGTTCGGAAGAGATCATTGCCAGAATCTTCCACAGTTTCTATTAGTGAGCAAGATGGAGATGATAGCGAAGGATGCTCTGACAGCATCACAACAGGCAGGCAACGTAAAAGGCGACAAAAAATTGCTTCTGTGCAGGCGAGAGGAGAAAGTCGATATAATCTGAGGCGACACAAGATTGCTGGCAAAGCTAATGCAACTCAGGTTTCAGAAAATCTGACGACAGTGATTGAGAAAGAAAACGAAGAAACCCCTAGTGTTGATGGTGAAAACGGGAAAAAAGTGGACTCCGTGCACGTTACAACAGTCAGAACTATCTATCGTTCCGAGGATAGAGTAGTTCAGTTTGAATTGCAAAGAACGGCTGAAGATAAAACTTCCATGGAGAAGTTGGTTACAGTCAACGATTTATGCGATGAAGCGAATGGTTCAGCCGAATATGAAGATGAAGATCAAAGCATACTCGATGATGAAGACGAGTATGATGAAGAGCAGCCTGATGTGGGATCAATTGGAAAGAAGATTTGGACCTTTTTCACAACTTAG 3531 41.55 MFTPQRTGWPAVSLTPRTEPKLALSNSILVGKGKDVTFTGGPPPPLGSLNDELYKTSTAVDTGDMDDWRKFKKAGLLDAAAMERKDREALLEKASRLQSELFDYQHNLGLLLIEKKDWASKYDQLGQDLAETEEIFNREQSAHLIALSEVETRRDNLKKALAAERQHVSSLKQALCEVSEERAEIKLTSQKKLADANALMHGIEEKSLELQKKLNAAEAKLAEVNRKSSELEMRMHEVEARESVLQTEQISLVTGKEAHQATSHKERESLRKLQQKLQEWEERLSKNRELLNDKEQKVNENSTTMKQKEKDLEEMKKKIDLSSSVLKRKEDNVNRRLADVEAKEKEADFSRSLLEKKQEELHQMEENLRGREKMEIEQLLDEQRVILQKKKEEFELQLEEKRQSLDNEGSTRIGAIKRKDLETNHEKEKLVKQEQALEKKMLRAKEKEGELEQKIKTLKSKDKILKADERKLEVERLQMLADRESLQSLINEIEEIRTKNSQKERQFHEEREKLQVMKEERSEHIRLQCQLMQEIESYRLQNKIVTKEHEDLKQERVKFERDWEALDEKRAEIHNELRDLVEERKKLEILQGTEEERLRNEKNEMLIYMQRELENVKQEKELFASTTRHEQQALSEQAQNKHNQLLQDIEFQRKDLESRLQNSQMELAKIRQERELSFEEERERERNELFCLREIAQKETEELLSERHRLEKEKEVVSLNRKQLIADHIEIRQDIDKLNILSKELKIQREQLIQDRVRFLTFVDKHKSCGKCGVSIEEFIVPNLQIPEEIRESHPLANLDADSLQNLQREFAASEFGSSDSGGRMSWLRRCSRKILNLSPIKKIGHVIPPVSGKLAADCTDLEAKEPNVNVGNVKRSGIAYEPQESCFNENESSDVERLSFSDNIRVAEDRHANTFGDFSNLDGKFEKASEASKQRDMKRERQKHEKGLKSGHRTRSVKATVQDAKNFLGETAGQSDLNVPVQKSDLNSLNEGISNVRKRSLPESSTVSISEQDGDDSEGCSDSITTGRQRKRRQKIASVQARGESRYNLRRHKIAGKANATQVSENLTTVIEKENEETPSVDGENGKKVDSVHVTTVRTIYRSEDRVVQFELQRTAEDKTSMEKLVTVNDLCDEANGSAEYEDEDQSILDDEDEYDEEQPDVGSIGKKIWTFFTT 1176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6021298 6037529 + CcPI632755_01g006020.1 Cco01g0602 169464

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0602 1176 MobiDBLite consensus disorder prediction 1138 1162 - -
Cco01g0602 1176 MobiDBLite consensus disorder prediction 1138 1160 - -
Cco01g0602 1176 MobiDBLite consensus disorder prediction 927 945 - -
Cco01g0602 1176 Coils Coil 263 404 - -
Cco01g0602 1176 Coils Coil 486 520 - -
Cco01g0602 1176 MobiDBLite consensus disorder prediction 927 957 - -
Cco01g0602 1176 MobiDBLite consensus disorder prediction 995 1052 - -
Cco01g0602 1176 Coils Coil 735 755 - -
Cco01g0602 1176 Coils Coil 427 461 - -
Cco01g0602 1176 Coils Coil 200 241 - -
Cco01g0602 1176 Coils Coil 628 673 - -
Cco01g0602 1176 MobiDBLite consensus disorder prediction 995 1025 - -
Cco01g0602 1176 Coils Coil 599 619 - -
Cco01g0602 1176 PANTHER PROTEIN CROWDED NUCLEI 4 1 1176 IPR040418 GO:0005634(InterPro)|GO:0006997(InterPro)
Cco01g0602 1176 Coils Coil 147 174 - -
Cco01g0602 1176 Coils Coil 80 107 - -
Cco01g0602 1176 Coils Coil 535 590 - -
Cco01g0602 1176 Coils Coil 693 713 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0602 K27866 - - csv:101222820 1911.35
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0602 Cco-Chr1:6021298 Cco11g0543 Cco-Chr11:5743764 1.40E-76 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g246 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0864 Cone19ag0864 . . . Csa05g02073 . . . Blo11g00826 Bda07g01523 . Bpe11g01685 . . . . Cmo04g02051 . . . Car04g01940 . . . Bhi12g00824 . . . . . Lcy10g0868 Cla01g00563 Cam01g0586 Cec01g0578 Cco01g0602 Clacu01g0581 Cmu01g0552 Cre09g1955 Lsi09g00612 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004989 1 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 3 4 1 1 1 1 1 39