Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0612 ATGAGTGGCGGTGGCAGTGGCACTCCTCGAAGTACTAGGGATTTGATCTGCAACGCCGGTGCCGGTGCTGCCGCAGGTTCTATAGCAGCCACGTTCGTTTGCCCTTTAGATGTCATCAAGACGAGGCTGCAAGTGCATGGTCTTCCATCTGGTCAACGAGGAGGTAGTATTATTATCACTAGCCTACAAGACATAATGCGTTCTGAAGGTTTCAGGGGAATGTACCGTGGCCTTTCACCAACAATAGTAGCGCTTCTTCCAAACTGGGCTGTCTACTTCACAGTTTATGAGCATCTAAAAGGCCTACTTCATTCAGATGGGGACGATGGTCATCAACTCTCATTTGGGGAACATATGGTTGCTGCTGCTGGAGCTGGGGCATCTACTGCCATTGCAACAAATCCTTTGTGGGTTGTTAAGACAAGACTCCAAACACAGGGAATGAGGCCTGGTGTGGTTCCTTACACAGGCATGGTTTCAGCATTTACCAGGATTGTACAGGAAGAAGGAATTCGTGGGCTTTACAGTGGTATCATCCCTTCATTGGTTGGGATAAGTCATGTTGCAATTCAATTTCCTGCATACGAAAAGCTCAAATCGTATATGGCAGAAAGAGATAACACGACCATTGACAAGCTAAGTCCAGGACATTTAGCTATTGCCTCCTCGTTGTCGAAAATTACGGCCTCCGTAACGACTTACCCACATGAGGTAGTTCGTTCCCGGCTACAAGAGCAAGGCCAAGCCAGAAACGTTGCTCCTCAATACTCAGGAGTAATGGACTGTATCAAAAAGGTTTTTCGAAAGGAAGGTCTCCCCGGTTTTTATAGAGGTTGTGCGACGAATCTGTTGCGAACAACTCCATCCGCTGTAATAACTTTCACCAGCTATGAAATGATACATAGGTTCCTACTGCGAGTTATACCTTCAAGTGAGGAGAAATACTCCGAAATTCAACCGAACTCCGATAGCAATAGCCATGTGAAGCCCCAAAAGGGGATCAGAGACGACTCAAAGGAAGATAGTGATTCCAGCATACAACAATCACAATCTCAACCAAGTAAGCAAACTAGAATTCCTCTGGGGAATAAAGAACACTTAACATCTAGACATTGA 1116 45.88 MSGGGSGTPRSTRDLICNAGAGAAAGSIAATFVCPLDVIKTRLQVHGLPSGQRGGSIIITSLQDIMRSEGFRGMYRGLSPTIVALLPNWAVYFTVYEHLKGLLHSDGDDGHQLSFGEHMVAAAGAGASTAIATNPLWVVKTRLQTQGMRPGVVPYTGMVSAFTRIVQEEGIRGLYSGIIPSLVGISHVAIQFPAYEKLKSYMAERDNTTIDKLSPGHLAIASSLSKITASVTTYPHEVVRSRLQEQGQARNVAPQYSGVMDCIKKVFRKEGLPGFYRGCATNLLRTTPSAVITFTSYEMIHRFLLRVIPSSEEKYSEIQPNSDSNSHVKPQKGIRDDSKEDSDSSIQQSQSQPSKQTRIPLGNKEHLTSRH 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6174505 6178475 + CcPI632755_01g006120.1 Cco01g0612 169474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0612 371 MobiDBLite consensus disorder prediction 329 343 - -
Cco01g0612 371 PRINTS Mitochondrial carrier protein signature 128 146 IPR002067 GO:0055085(InterPro)
Cco01g0612 371 PRINTS Mitochondrial carrier protein signature 31 45 IPR002067 GO:0055085(InterPro)
Cco01g0612 371 PRINTS Mitochondrial carrier protein signature 77 97 IPR002067 GO:0055085(InterPro)
Cco01g0612 371 PRINTS Mitochondrial carrier protein signature 18 31 IPR002067 GO:0055085(InterPro)
Cco01g0612 371 PRINTS Mitochondrial carrier protein signature 175 193 IPR002067 GO:0055085(InterPro)
Cco01g0612 371 PRINTS Mitochondrial carrier protein signature 222 244 IPR002067 GO:0055085(InterPro)
Cco01g0612 371 ProSiteProfiles Solute carrier (Solcar) repeat profile. 113 201 IPR018108 -
Cco01g0612 371 ProSiteProfiles Solute carrier (Solcar) repeat profile. 13 102 IPR018108 -
Cco01g0612 371 ProSiteProfiles Solute carrier (Solcar) repeat profile. 213 303 IPR018108 -
Cco01g0612 371 MobiDBLite consensus disorder prediction 344 363 - -
Cco01g0612 371 Pfam Mitochondrial carrier protein 212 305 IPR018108 -
Cco01g0612 371 Pfam Mitochondrial carrier protein 16 105 IPR018108 -
Cco01g0612 371 Pfam Mitochondrial carrier protein 112 204 IPR018108 -
Cco01g0612 371 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 11 319 IPR044712 GO:0006862(InterPro)|GO:0022857(PANTHER)|GO:0035352(PANTHER)|GO:0051724(PANTHER)|GO:0055085(InterPro)|GO:0055085(PANTHER)
Cco01g0612 371 FunFam Nicotinamide adenine dinucleotide transporter 2, mitochondrial 14 304 - -
Cco01g0612 371 SUPERFAMILY Mitochondrial carrier 14 299 IPR023395 -
Cco01g0612 371 Gene3D Mitochondrial carrier domain 109 313 IPR023395 -
Cco01g0612 371 Gene3D Mitochondrial carrier domain 4 108 IPR023395 -
Cco01g0612 371 MobiDBLite consensus disorder prediction 315 371 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0612 Cco-Chr1:6174505 Cco09g0535 Cco-Chr9:4676314 3.80E-118 dispersed
Cco01g0612 Cco-Chr1:6174505 Cco07g0359 Cco-Chr7:3861113 2.20E-28 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0612 K15115 - csv:101216902 641.343