Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0619 ATGGCGACGGTACGAACCGATATTCGCTGTGCTTATCATATCGCCTCCTCCACCTTCCGCTCCCTCTCCCCTAATCTCATGCTCCGTCCAACCGCCGCCGTTTCAGGTAAACTTCTCTTCCCCTCCTTCAAGTTGAGAGCATTCTCCACCGGGGCCGCTGTCAGAGTTCCTGAGAAGCCGTCGATTTGTACGGCCGACGAGCTTCATTATGTCTCTGTACCGAATTCTGACTGGAGGCTTGCACTCTGGCGCTACCATCCCTCCCCTCAGGCGCCTCGGAGGAATCATCCGCTGTTGTTATTATCCGGAGTCGGGACTAATGCCATTGGATATGATCTCGCCCCTGGGTGTTCTTTTGCTCGGTATATGTCTGGCCAGGGGTTTGATACATGGATTCTTGAAGTTCGAGGTGCAGGATTGAGCTTGCAGGAACCAGATTTGAAAGAAATAGAACATTCAGCTAAAGTTAAATCTGACAAAATGGAAGCAGCCTCTGAGGGAAAAATTAATGGAAATTTACATGTGGCAGAAGAGTCAACAAAAATTTTAAATGACCTTGCAAAATCAGATAGCTGCATCAATGGGAAAGAATCCGACTTTTCTATGGTTGAAGAAGAAGATTTCATAGGAATAACAACAATTTGGGATGAGTCAAGTGTAGTTTCAGAGTTAACAGAAACTTTTATGCGTCTGTCAGAACGGCTATCTGGCTTTCTAAGTGAAGGTCAATCAAGGATTATGTCTGCCAAACTATTTGATCAAATTTCAAAACTCTTAGTTGATTCCCAATTATCTGAACGTTTTAATGAGGTGAGGGGAAGGCTTTCGAATTTGTTGGAAACAGGGCAGACCTCAGTCATTGCTGGCCAGATCAGGGATTTGAGTCAAAGGCTTGTAGAAATTATTGAAGACGGTCAACGATCTGTTTCACCTCCATTGTTCAATTTGCAAGAACGGTTTACCTCAACAATTGATGATTTTCAGAAACAACTGGATTTAATAGTAAAGTATGACTGGGACTTTGATCATTACCTGCTGGAGGACTTACCTGTTGCGATTGATTACATCAGGGCTATAAGCAAGCCAAAGGATGGTAAATTGCTTGCTATTGGGCACTCAATGGGTGGTATCTTGCTTTATGCAGAACTTTCTCGTTGTGGTTTTGAAGGACGAGACCCCAGATTGGCTGCTATTGTTACTTTGGCATCGTCCCTGGACTATACTTCTTCAAAATCAGCCCTGAAATTGCTTTTGCCCCTTGCAGATCCTGCACAAGCTCTTAATGTTCCAGTTGTTCCGTTAGGAGCTCTGCTATCAGCTTCATATCCTCTATCATCTCGCCCTCCTTATGTCTTTTCTTGGCTGAATAATCTTATTTCGGCAGAAGATATGATGCATCCTGAAATGTTAAAAAAACTCGTCTTGAACAACTTCTGCACCATTCCCGCTAAACTCATCTTACAACTTACTACTGCTTTTCGAGAGGGTGGTTTACGAGACAGAAATAATACTTTTTTTTACAAGGACCATCTTCATAAATGCCCCGTCCCAGTCTTAGCGCTGGCTGGAGACCAGGATCTAATCTGTCCCCCTGTAGCTGTAGAAGAAACTGCAAAGCTTATTCCGAAGCACCTCGTTTCCTATAAATGTTTTGGAGAACCAGGAGGTCCACATTATGCACATTATGATTTAGTTGGAGGACGGCTGGCGGTGGAACAGGTATACCCATGTATCATCGAATTTATTACCCAGCATGATGCAATTTGA 1767 43.8 MATVRTDIRCAYHIASSTFRSLSPNLMLRPTAAVSGKLLFPSFKLRAFSTGAAVRVPEKPSICTADELHYVSVPNSDWRLALWRYHPSPQAPRRNHPLLLLSGVGTNAIGYDLAPGCSFARYMSGQGFDTWILEVRGAGLSLQEPDLKEIEHSAKVKSDKMEAASEGKINGNLHVAEESTKILNDLAKSDSCINGKESDFSMVEEEDFIGITTIWDESSVVSELTETFMRLSERLSGFLSEGQSRIMSAKLFDQISKLLVDSQLSERFNEVRGRLSNLLETGQTSVIAGQIRDLSQRLVEIIEDGQRSVSPPLFNLQERFTSTIDDFQKQLDLIVKYDWDFDHYLLEDLPVAIDYIRAISKPKDGKLLAIGHSMGGILLYAELSRCGFEGRDPRLAAIVTLASSLDYTSSKSALKLLLPLADPAQALNVPVVPLGALLSASYPLSSRPPYVFSWLNNLISAEDMMHPEMLKKLVLNNFCTIPAKLILQLTTAFREGGLRDRNNTFFYKDHLHKCPVPVLALAGDQDLICPPVAVEETAKLIPKHLVSYKCFGEPGGPHYAHYDLVGGRLAVEQVYPCIIEFITQHDAI 588
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6256227 6263094 - CcPI632755_01g006190.1 Cco01g0619 169481

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0619 588 PANTHER LYSOSOMAL ACID LIPASE-RELATED 66 585 - -
Cco01g0619 588 PIRSF UCP031088_abhydr 5 588 IPR016969 -
Cco01g0619 588 FunFam Alpha/beta hydrolase family protein 67 160 - -
Cco01g0619 588 Pfam alpha/beta hydrolase fold 344 563 IPR000073 -
Cco01g0619 588 Gene3D alpha/beta hydrolase 67 160 IPR029058 -
Cco01g0619 588 Gene3D alpha/beta hydrolase 328 584 IPR029058 -
Cco01g0619 588 FunFam Alpha/beta hydrolase family protein 332 584 - -
Cco01g0619 588 SUPERFAMILY alpha/beta-Hydrolases 69 585 IPR029058 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0619 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0619 Cco-Chr1:6256227 Cco01g1673 Cco-Chr1:29471126 1.70E-136 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g357 Blo01g00736 . Bda01g01845 . . . . . . . . . . . . . Cpe01g01801 . . . . . . . . . . . . . . . . Cone6ag0424 Cone9ag0446 . Csa05g02058 . . . . . . . Bpe02g02021 Bma01g00443 . . Cmo04g02174 Cmo15g00969 Cma04g02079 Cma15g00929 Car04g02016 Car15g00873 Cpe13g00390 . Bhi12g00846 . . . . . Lcy10g1467 Cla01g00578 Cam01g0605 Cec01g0595 Cco01g0619 Clacu01g0597 Cmu01g0570 Cre09g1937 Lsi09g00626 . Chy09g00886 Cme09g01419
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006608 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 2 38