Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0621 ATGTTGAAATTTGGCCTTCAAATAGAGACATTCAGTAGTTGGATAAAAGATAAGCATGCTCCCCAAAAGGGCCAAAGCTATAGACAAAGACAGAAATATGAGATAGAGAAGAGGCAAGGAAGTCAAAGCTCAAAAGCGAAATGCAGTGCATCAGTGCATTGCAATGTGTTGCCTATTCAACCCCCCTTTTTTGCCTCCTTGTTCAAATCCCTTTTGGAAGCTCACAAATTTACCACCACTCAACTAGCATCTATTGCTCTATCAATGATTCAGGAAAAAGGTGACCGGTTCGACCTTGTCATGGCTAATGTTAGCATGCCTGATATGGACAGTTTTTCGTTTTTGGACGTGCTCCTTAAGATGAATATTGCTGTCATTTTTATGTCCTCGGGGATGAACTTGAGTGTGGCTACGAAAGCATTGGCAGAAGGAGCATGCTATTTTCTTCAGAAACCTATTTCCAAGGATGATCTCAAATATGTGTGGCAACACGTGTATCGATGGAACAGAAACATAACCAAACAAACCCAAAAAGCAAAATGTATGGAAAAGGCCAAACCTAGAAAGGAATCTGTAGGTATCCAAATTGCAGACGCTGTTGTTTTGTCTCGGTCTGCCGCTGCAGTTAGTTATAATAATAATTGTTGCATTAATTATAAACCTATGAACTATAAAGAAACAGAGAAGAGTAAGCAAATCGTATCACATGATAGCCTGGTTGGGTCTTACTTTGGAGGAAAGAGATTAACTGATGACATAGAAGGAATAAACAGGGAAAAGAGAGTTAAATATTATTCAGAACCTACCAAGTTTGGATTTTCAAGAATTGATGAGGATCGTGAAAGAAGGAAGGAATATTATATTGCCAGTGATAGCAGATCACGTGTCGTCTGGAATGCGGAACGACGTCGGAAGTTCACAGATGCCCTTAACAAGCTAGGTGATAAATCTCGCCCAAAACTTATACTGAAGATGATGAATGAACCATGTTTGACCCTGCGCCAGGTTGCGAACCACCTGCAGAAATACAAAGCTCAAGTAGAATGCATCAAAAGGAGGAGAGAAAATAAATTACCTAATAGGAGGGAAGCATCCAAATCCGATTTCTCAGTCAGGACTCAACTTCCCCCGCTGCTGCAGCAGCACCATGAGACAAGCAGATTTTCAAATGTAGGTTTGACCTCTGGTTTGGGGGGTGAAAGATTCCAACTTATAGCGCCTAAAAGTCAGCATAGTCCTCGATTGCCTGTTAGCGACTTTGTAAATTGCGATCTGAAAATGCTTCACCACAATTTTCAGCATGTCAGCTCAAACTACGATTCAGTTTCATATGACATCAATAAGGAAGTTGGATTATGCCCTGATAATATTCAAACATTTCAAAAGGTAGGGAGTGCTTTTCCCACTGACAATTGTGGGAAGTTTGCTCTCATAGGAGGGGGTGTTCAAACATCTGAGTTAAACTTCTCAAATGTATCTAAAATGACTTCAGAGGTAGCTTCTTCTGTATTTGATGAAACTCAATTCCCAAACAATCTTCTTGATGGTGTAATTCATCAGCTAGATTTGACTGCTTTCAAAATTGAAAACCAAGAAGCATTGGAATGTAGTGGTACATCTGAAGAGACCCAGTCAATGTCAAGGGACATAGCTATACTCGATTCAATCAACTTGGACAATGTTGTTGAGGTGGGACAGGAACTTCCTGCAGCTTCTGAAAGTCAAGGAAGCCAACAATTAGCAGAATATGCATATCTATTAGATGTATTAGAAGATGATCCGTACGACTTCGTTAGTGACTTGAATCTGAGTGATGTTGATAAATACAGTGAATGGCTGAGGAACACTGTACTCGAAAACAGAAACGGTCCAGACAGTTTTATCACTGACAATGCAGAGAACTTTCCAGTTGAAGACACTCGATAA 1926 40.19 MLKFGLQIETFSSWIKDKHAPQKGQSYRQRQKYEIEKRQGSQSSKAKCSASVHCNVLPIQPPFFASLFKSLLEAHKFTTTQLASIALSMIQEKGDRFDLVMANVSMPDMDSFSFLDVLLKMNIAVIFMSSGMNLSVATKALAEGACYFLQKPISKDDLKYVWQHVYRWNRNITKQTQKAKCMEKAKPRKESVGIQIADAVVLSRSAAAVSYNNNCCINYKPMNYKETEKSKQIVSHDSLVGSYFGGKRLTDDIEGINREKRVKYYSEPTKFGFSRIDEDRERRKEYYIASDSRSRVVWNAERRRKFTDALNKLGDKSRPKLILKMMNEPCLTLRQVANHLQKYKAQVECIKRRRENKLPNRREASKSDFSVRTQLPPLLQQHHETSRFSNVGLTSGLGGERFQLIAPKSQHSPRLPVSDFVNCDLKMLHHNFQHVSSNYDSVSYDINKEVGLCPDNIQTFQKVGSAFPTDNCGKFALIGGGVQTSELNFSNVSKMTSEVASSVFDETQFPNNLLDGVIHQLDLTAFKIENQEALECSGTSEETQSMSRDIAILDSINLDNVVEVGQELPAASESQGSQQLAEYAYLLDVLEDDPYDFVSDLNLSDVDKYSEWLRNTVLENRNGPDSFITDNAENFPVEDTR 641
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6275617 6280076 - CcPI632755_01g006210.1 Cco01g0621 169483

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0621 641 Gene3D - 61 187 - -
Cco01g0621 641 SUPERFAMILY Homeodomain-like 292 346 IPR009057 -
Cco01g0621 641 Pfam Response regulator receiver domain 64 159 IPR001789 GO:0000160(InterPro)
Cco01g0621 641 Gene3D - 290 350 - -
Cco01g0621 641 ProSiteProfiles Response regulatory domain profile. 54 166 IPR001789 GO:0000160(InterPro)
Cco01g0621 641 SMART REC_2 59 162 IPR001789 GO:0000160(InterPro)
Cco01g0621 641 SUPERFAMILY CheY-like 63 175 IPR011006 -
Cco01g0621 641 NCBIfam myb-like DNA-binding domain, SHAQKYF class 294 345 IPR006447 GO:0003677(InterPro)
Cco01g0621 641 Coils Coil 333 353 - -
Cco01g0621 641 PANTHER TWO-COMPONENT RESPONSE REGULATOR 76 401 IPR045279 GO:0009736(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0621 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0621 Cco-Chr1:6275617 Cco05g1878 Cco-Chr5:27815117 2.90E-20 dispersed
Cco01g0621 Cco-Chr1:6275617 Cco05g2502 Cco-Chr5:33402515 5.90E-34 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g367 . . . . . . . . . . . Cma04g00061 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma04g02080 . . . . . . . . . . . . Cla01g00580 Cam01g0607 Cec01g0597 Cco01g0621 Clacu01g0599 Cmu01g0572 Cre09g1935 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002835 0 8 0 0 0 1 3 1 1 1 1 1 2 1 1 5 1 0 0 1 1 7 3 1 1 1 2 8 2 0 54
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58583 PF00072 Response_reg 3.70E-10 CL0304 Cco TR