Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0622 ATGGGAGTTTCTTCAGTGACGCTTAACGGCTTACACTTGATTGTCATGTTCCTCCTCCCTCCGCTGATTCCCTATTTTTGCACCCTCAACCAAAATCTAATCACGATCAAATCCACTTTAATCACACGGTCCATATTTCATTACAAGTGGGGGCCCCACGCTATAGGCTACCCTTTGTGGGCCCCCAAATCTTCCTCCTATAAAACCACTTCATCTTCTCCATTCCTCAACTCTCTCTTTCTCTCTCCCTCTCTCCTTCTCTGCGTATTCTTTGCCGATTCAGTTGAAATGCACAAAAGCACCACTTCTGCGTCGAATACCATTGCTGCTGCGACCATTATGTCATCGTCGTCGCAGCTCAAGTCGCAGCTTCAAACAAACGATGTTTATGCTTCCCTCTATAATTCACCAATCTTTGCTCCAAAGCAATCCGTGCCGGTATCTCTTCCATTGACTCTCTATGGTGACTCGACTCACGCGGATTCAACCTCCTCTTCAAAAACGATAAGCAGCCACCTCTATCAAACCCGCGTCGTACAAGATCACCAGGAAATGGTCAATCGCCATAGCCTCTGTCTCACCCATCTTCGAGAAGCAACCGAAGAAGCCGATGCTCTTCGGCAAGAGAATATCCACCTCAGAAGTATTAATCACGAGCTTAGCAAACACCTCAGCCTCCTGATCCACGCTTCGGTTCAGAAACAGTACGGCTCCTCTGATCAAGCTCCTCCGTTTAATTTTGTGGAAGGATTCCGCGGACTCAGTGTATCAGAGAAGGGAGCAAGCAGTTCGGCATGGGAGGATATTTCCGATGAGAGTCCGACGAGCGTAATGGAGGGCGGAAGGGTAGAGGGCGTTGAGGTGGAGAGATTTTCGCTCCCAAAGAGCATCTCCGTGAGGTCAAATGGATACCTGAAGATGGCACAAGCCGGCACCAGCCAGGGCGGAAAGGTCCGCGCCTCATCTCGGCCCAGAACTGCAAGTCCCGTCAAAGTTACGCAGAAGGTGTACGTGCAAGGAGTGAAAGAAGAGGAAAAGCCACTGGAATTAGAGGTGTACAACCAGGGCATGTTCAAAACCGAGCTCTGCAACAAATGGCAAGAAACGGGCAGCTGCCCCTATGGAGACCACTGCCAATTCGCCCATGGAATAGAGGAGCTCCGCCCTGTGATCCGCCACCCCCGCTACAAGACGGAGGTCTGCCGGATGGTCCTCGCCGGAGTCGTCTGCCCTTACGGTCACCGCTGCCACTTTCGTCATGCACTCACTGACCAGGAAAGGCTCATGGGAACACTCAAGCCCACCTGCAGGACCACCACCCCTAAGCTCGACAGGTGA 1338 51.64 MGVSSVTLNGLHLIVMFLLPPLIPYFCTLNQNLITIKSTLITRSIFHYKWGPHAIGYPLWAPKSSSYKTTSSSPFLNSLFLSPSLLLCVFFADSVEMHKSTTSASNTIAAATIMSSSSQLKSQLQTNDVYASLYNSPIFAPKQSVPVSLPLTLYGDSTHADSTSSSKTISSHLYQTRVVQDHQEMVNRHSLCLTHLREATEEADALRQENIHLRSINHELSKHLSLLIHASVQKQYGSSDQAPPFNFVEGFRGLSVSEKGASSSAWEDISDESPTSVMEGGRVEGVEVERFSLPKSISVRSNGYLKMAQAGTSQGGKVRASSRPRTASPVKVTQKVYVQGVKEEEKPLELEVYNQGMFKTELCNKWQETGSCPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTDQERLMGTLKPTCRTTTPKLDR 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6288207 6293398 + CcPI632755_01g006220.1 Cco01g0622 169484

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0622 445 SUPERFAMILY CCCH zinc finger 354 389 IPR036855 GO:0046872(InterPro)
Cco01g0622 445 SMART c3hfinal6 357 384 IPR000571 GO:0046872(InterPro)
Cco01g0622 445 SMART c3hfinal6 395 422 IPR000571 GO:0046872(InterPro)
Cco01g0622 445 SUPERFAMILY CCCH zinc finger 391 425 IPR036855 GO:0046872(InterPro)
Cco01g0622 445 ProSiteProfiles Zinc finger C3H1-type profile. 395 423 IPR000571 GO:0046872(InterPro)
Cco01g0622 445 PANTHER CCCH ZINC FINGER/TIS11-RELATED 162 423 IPR045877 GO:0003729(InterPro)
Cco01g0622 445 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 358 383 IPR000571 GO:0046872(InterPro)
Cco01g0622 445 FunFam Zinc finger protein 36, C3H1 type-like 1 391 427 - -
Cco01g0622 445 ProSiteProfiles Zinc finger C3H1-type profile. 357 385 IPR000571 GO:0046872(InterPro)
Cco01g0622 445 Gene3D - 351 390 - -
Cco01g0622 445 Gene3D - 391 427 - -
Cco01g0622 445 Coils Coil 196 216 - -
Cco01g0622 445 FunFam zinc finger CCCH domain-containing protein 15-like 351 390 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0622 K18753 - - csv:101203274 627.091
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0622 Cco-Chr1:6288207 Cco11g0749 Cco-Chr11:8330780 2.00E-36 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g371 . . . . Bpe13g01048 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0797 Cone19ag0802 . . . Csa05g02054 . . . . . . . . . Bma06g01092 . . Cmo15g00971 . Cma15g00931 . Car15g00875 Cpe13g00388 . Bhi12g00856 . . . Hepe02g2686 . Lcy10g1463 Cla01g00581 Cam01g0608 Cec01g0599 Cco01g0622 Clacu01g0600 Cmu01g0573 Cre09g1932 Lsi09g00631 Csa05g01229 Chy09g00883 Cme09g01416
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco08g0586 . 77 566 C3H Transcription Factor Family AT2G31510 76.2 1.7e-227 785.4
Cco11g0927 . 25 283 C3H Transcription Factor Family AT2G31510 83.1 3.1e-123 439.1
Cco08g0586 . 60 522 C3H Transcription Factor Family AT2G31770 59.7 4.1e-169 591.7
Cco11g0927 . 25 272 C3H Transcription Factor Family AT2G31770 58.1 1.6e-77 287.3
Cco08g0586 . 60 529 C3H Transcription Factor Family AT2G31760 58.3 6.2e-167 584.3
Cco11g0927 . 25 257 C3H Transcription Factor Family AT2G31760 58.8 5.0e-76 282.3
Cco04g1262 . 8 169 C3H Transcription Factor Family AT5G06490 54.6 1.9e-47 186.0
Cco04g1262 . 8 169 C3H Transcription Factor Family AT5G06490 54.6 1.9e-47 186.0
Cco11g0509 . 1 226 C3H Transcription Factor Family AT3G02290 62.8 5.0e-76 281.2
Cco06g1241 . 68 372 C3H Transcription Factor Family AT1G11020 75.6 2.3e-135 478.8
Cco07g1542 . 62 221 C3H Transcription Factor Family AT1G50440 75.6 3.9e-68 255.0
Cco04g0291 . 153 513 C3H Transcription Factor Family AT5G08750 61.0 8.1e-121 430.6
Cco10g0882 . 26 456 C3H Transcription Factor Family AT3G16090 72.6 1.4e-168 589.7
Cco11g0509 . 1 225 C3H Transcription Factor Family AT5G38895 58.0 4.4e-73 271.9
Cco08g1720 . 16 227 C3H Transcription Factor Family AT1G19310 66.8 1.3e-79 293.1
Cco04g1378 . 40 249 C3H Transcription Factor Family AT1G19310 59.4 5.8e-69 257.7
Cco04g1671 . 9 323 C3H Transcription Factor Family AT2G22120 83.9 2.0e-159 558.9
Cco08g1224 . 73 180 C3H Transcription Factor Family AT5G07040 67.6 3.1e-40 161.8
Cco06g1697 . 30 418 C3H Transcription Factor Family AT1G18470 75.8 5.8e-179 624.0
Cco01g0622 . 165 396 C3H Transcription Factor Family AT1G68200 50.2 4.8e-50 195.3
Cco08g0586 . 60 522 C3H Transcription Factor Family AT2G31770 59.7 4.1e-169 591.7
Cco11g0927 . 25 272 C3H Transcription Factor Family AT2G31770 58.1 1.6e-77 287.3
Cco08g0586 . 60 529 C3H Transcription Factor Family AT2G31760 58.3 6.2e-167 584.3
Cco11g0927 . 25 257 C3H Transcription Factor Family AT2G31760 58.8 5.0e-76 282.3
Cco07g0065 . 25 372 C3H Transcription Factor Family AT2G30580 50.9 5.8e-81 298.1
Cco09g2351 . 122 354 C3H Transcription Factor Family AT5G55970 68.2 3.3e-94 342.0
Cco04g0291 . 153 513 C3H Transcription Factor Family AT5G63780 57.2 1.8e-115 412.9
Cco10g1744 . 1 397 C3H Transcription Factor Family AT3G58030 50.7 8.8e-98 354.4
Cco09g2351 . 124 423 C3H Transcription Factor Family AT4G26580 63.0 7.0e-111 397.5
Cco04g0788 . 86 550 C3H Transcription Factor Family AT5G01960 68.9 2.3e-167 585.5
Cco07g0562 . 1 484 C3H Transcription Factor Family AT5G01960 57.9 1.1e-150 530.0
Cco02g1178 . 105 256 C3H Transcription Factor Family AT2G04240 59.5 5.2e-43 171.0
Cco02g0317 . 1 149 C3H Transcription Factor Family AT2G04240 57.8 2.5e-37 152.1
Cco02g2442 . 1 192 C3H Transcription Factor Family AT5G19430 57.3 4.9e-56 214.9
Cco07g1193 . 130 585 C3H Transcription Factor Family AT5G45290 52.9 4.6e-104 375.6
Cco02g2442 . 40 204 C3H Transcription Factor Family AT5G12310 58.4 8.1e-51 197.6
Cco06g1587 . 171 461 C3H Transcription Factor Family AT5G05810 53.5 9.8e-75 277.7
Cco11g0657 . 53 205 C3H Transcription Factor Family AT5G05830 58.8 3.1e-45 178.7
Cco04g0927 . 67 197 C3H Transcription Factor Family AT5G05830 60.4 3.0e-40 162.2
Cco06g1008 . 30 426 C3H Transcription Factor Family AT4G28890 51.0 9.7e-97 350.9
Cco11g0509 . 1 226 C3H Transcription Factor Family AT5G15790 59.9 4.7e-74 274.6
Cco11g0691 . 86 357 C3H Transcription Factor Family AT3G55530 80.2 5.0e-115 411.0
Cco09g0645 . 27 299 C3H Transcription Factor Family AT1G63900 75.2 2.1e-116 415.6
Cco05g0324 . 10 392 C3H Transcription Factor Family AT2G44580 54.0 1.5e-120 429.9
Cco08g1720 . 25 150 C3H Transcription Factor Family AT1G74990 59.8 9.1e-41 163.3
Cco05g1824 . 3 314 C3H Transcription Factor Family AT5G20910 63.8 5.0e-111 397.9
Cco10g0882 . 144 444 C3H Transcription Factor Family AT1G65040 69.6 3.9e-111 398.3
Cco04g1378 . 41 251 C3H Transcription Factor Family AT2G23780 60.6 1.1e-72 270.0
Cco08g1720 . 6 229 C3H Transcription Factor Family AT2G23780 57.0 6.9e-70 260.8
Cco01g0255 . 1 170 C3H Transcription Factor Family AT1G63840 56.1 1.1e-45 179.9
Cco01g0687 . 18 353 C3H Transcription Factor Family AT1G68070 63.8 1.3e-117 419.9
Cco11g1944 . 4 182 C3H Transcription Factor Family AT1G76410 55.2 2.6e-51 198.7
Cco10g0011 . 1 159 C3H Transcription Factor Family AT1G76410 56.3 4.8e-45 177.9
Cco08g1449 . 1 410 C3H Transcription Factor Family AT1G80400 54.0 5.9e-112 401.4
Cco10g0011 . 1 150 C3H Transcription Factor Family AT2G17450 57.5 5.2e-39 157.9
Cco08g0586 . 77 566 C3H Transcription Factor Family AT2G31510 76.2 1.7e-227 785.4
Cco11g0927 . 25 283 C3H Transcription Factor Family AT2G31510 83.1 3.1e-123 439.1
Cco04g1262 . 7 168 C3H Transcription Factor Family AT2G35910 63.4 3.9e-54 208.4
Cco10g1805 . 15 161 C3H Transcription Factor Family AT2G35910 51.0 4.9e-41 164.9
Cco04g0173 . 1 307 C3H Transcription Factor Family AT2G41980 80.5 2.2e-151 531.9
Cco05g1060 . 61 318 C3H Transcription Factor Family AT2G41980 80.6 1.5e-128 456.1
Cco05g1061 . 684 941 C3H Transcription Factor Family AT2G41980 80.6 1.5e-128 456.1
Cco02g2532 . 139 428 C3H Transcription Factor Family AT2G41980 73.4 2.4e-126 448.7
Cco01g0811 . 48 305 C3H Transcription Factor Family AT2G41980 78.7 2.7e-125 445.3
Cco06g0128 . 43 301 C3H Transcription Factor Family AT2G41980 75.3 2.5e-123 438.7
Cco05g2942 . 111 359 C3H Transcription Factor Family AT2G41980 79.1 1.2e-120 429.9
Cco05g0640 . 119 393 C3H Transcription Factor Family AT3G06140 63.1 2.6e-95 345.9
Cco10g2019 . 33 329 C3H Transcription Factor Family AT3G09770 58.9 7.9e-86 314.3
Cco06g1898 . 58 352 C3H Transcription Factor Family AT3G47990 72.1 3.7e-127 451.4
Cco01g1455 . 58 349 C3H Transcription Factor Family AT3G47990 69.8 8.7e-121 430.3
Cco11g1944 . 4 186 C3H Transcription Factor Family AT1G20823 55.7 2.5e-52 202.2
Cco10g0011 . 1 159 C3H Transcription Factor Family AT1G20823 58.0 1.2e-46 183.3
Cco09g1986 . 36 404 C3H Transcription Factor Family AT3G18930 54.4 3.1e-84 309.3
Cco10g0048 . 20 235 C3H Transcription Factor Family AT5G66070 74.5 1.6e-74 276.2
Cco10g2064 . 3 273 C3H Transcription Factor Family AT5G02750 53.0 1.4e-67 253.4
Cco06g1697 . 34 470 C3H Transcription Factor Family AT1G73950 68.5 6.6e-170 594.0
Cco08g0239 . 1 160 C3H Transcription Factor Family AT1G33480 50.6 9.5e-39 157.5
Cco01g0687 . 15 251 C3H Transcription Factor Family AT2G01735 60.4 1.2e-73 273.5
Cco10g0354 . 60 269 C3H Transcription Factor Family AT2G01735 53.3 4.3e-52 201.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008528 1 2 0 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58584 PF00642 zf-CCCH 7.30E-12 CL0537 Cco TF