Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0634 ATGGCTGTTTTTCCTATCAACTCATCCAACTTGGATCTCTCCATTTCCATGCCGGGCTTTGCTTCTTCATCGACTCGTCCTCCGCTAATGAGAGAATTGGACATGAACCGAGTACCGACAACAGGAGAAGCAGAAGAAGAATGGGCGGTGGCACCGAGCGCGGAGGAAGAGGAAGAAGAAAGTTGCATTAATAATGGAGGTACTAAGCCAAGGAAGAAGCTTCGCCTGTCAACAGATCAGTCTCGTCTTCTTGAAGAAAGCTTTAGGCTCAATCATACATTAAACCCTAAGCAAAAGGAAGCATTGGCCATGGAGTTGAAGCTGAAGCCAAGACAAGTTGAAGTTTGGTTTCAGAATCGTAGGGCCAGGAGCAAACTGAAGCAAACTGAAATGGAATGCGAGTATTTGAAGAGATGGTTTGGATCATTAACAGAGCAAAACCATCGGTTGCAGCGGGAACTGGAGGAGCTGAGAGCTATCAAGGTTGCTCCATCGGCCATCGTCTCATGCCACGACCGACAGCCGCCCCTCTCGACGTCTACTATAACCATGTGTCCCCGGTGTGAGCGTATAACATCTAGTAAGGCCGCAATTGCCGCCGCAACAAAGCCATCAAAGGTGGTAACATCCACCCTGAAATTGCATCAGCCGTCGCGAGCTTGTTGA 666 48.8 MAVFPINSSNLDLSISMPGFASSSTRPPLMRELDMNRVPTTGEAEEEWAVAPSAEEEEEESCINNGGTKPRKKLRLSTDQSRLLEESFRLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNHRLQRELEELRAIKVAPSAIVSCHDRQPPLSTSTITMCPRCERITSSKAAIAAATKPSKVVTSTLKLHQPSRAC 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6447626 6451134 + CcPI632755_01g006340.1 Cco01g0634 169496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0634 221 MobiDBLite consensus disorder prediction 41 73 - -
Cco01g0634 221 ProSiteProfiles 'Homeobox' domain profile. 67 127 IPR001356 GO:0003677(InterPro)
Cco01g0634 221 SUPERFAMILY Homeodomain-like 59 128 IPR009057 -
Cco01g0634 221 Pfam Homeodomain 71 125 IPR001356 GO:0003677(InterPro)
Cco01g0634 221 ProSitePatterns 'Homeobox' domain signature. 102 125 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cco01g0634 221 SMART HOX_1 69 131 IPR001356 GO:0003677(InterPro)
Cco01g0634 221 Gene3D - 67 134 - -
Cco01g0634 221 Pfam Homeobox associated leucine zipper 127 159 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco01g0634 221 SMART halz 127 170 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco01g0634 221 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 35 208 IPR050762 -
Cco01g0634 221 CDD homeodomain 70 128 IPR001356 GO:0003677(InterPro)
Cco01g0634 221 FunFam Homeobox-leucine zipper protein 18 54 132 - -
Cco01g0634 221 Coils Coil 140 160 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0634 Cco-Chr1:6447626 Cco07g0723 Cco-Chr7:13656262 2.90E-57 dispersed
Cco01g0634 Cco-Chr1:6447626 Cco09g0363 Cco-Chr9:3298066 1.80E-35 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58585 PF00046 Homeodomain 1.30E-16 CL0123 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0634 K09338 - csv:101206325 300.441