Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0639 ATGACCAAAGAGGATGATTTTAAGCTACTAAAGTTTCAGACTTGTGATCTCAGAGTGAACATTCACTGTGATGGGTGTAGGCAGAAAGTCAAGAAACTTCTTCAGAGGATAGAAGGAGTGTTTCAGGTTGCCATAGGTGCAGAGAATCAAAAGGTTACCGTTTTAGGAAATGTGGATCCTGCAACTTTGATCAATAAGCTGGTGAGAGCTGGAAAACATGCTGAGCTTTGGTCACAGAAAGCAAACTCAAGCCCGAAACCGAAGAACAAAGACGATAAGACTCCGAACAAGGAACCGAAGCATCTCAAACTGACCTCATTCAACTGTGAAGATGATGACATTGTTGATTGTGTTGAGGAAGGAGAAGATTATGAAGCTGCACAACTTCAGTTCAGAGCAGCTAATCTTGATCTCCTTAGGCAGCAAGCAATCGAAGCGAACAATGCTGGGAAAGGCATTGGGATCAACCGAATTCCCGGGCTTGCCGGGGGAAATGGCAAGATGAACAACAACAACATCAACATCAACAACAAACCTGGGAATGGAAAGAAAATAGACCCTAATCAGCCAATGGCAATAAAAGACACCCCATCTGAGATTGACCGAAAAACTTTGGCAGCTCTGAAGATGAACAATGCTCAACTGTTCGGTAACAGCCGAGAAAGTATCAATCTCGGGGAAGCAAAAAGAGCAAACAACAATGATTTGAGTTCAATGATGAGCATGGCAGGGTTCAACGGTGGCAACCTTTTGAATTTCGCCACTCCGTCTTCCATTGATGTCAATTCAACAAACACCTCTCAAGGACTTCACCTCCAACAGAACAATGGCTATGGCTATGGCTACCAGCCATCATCAACCTCTGGATTCTCCATGGCAACTGGTCAATATCATCAACAACAACAACAACCAACCTTCATCAATGGCTACAATCAATACCATCAGCAGCAACCATTGATGAACATGAACAACATGGTAAGTAGACAAGCAATGAACCAGCAGCCTCAAATGATGTACAATAGAGCTCAATTGGTTCCACCAAACACAGGATATTACTTCAATTACAATCCAAGCCCTGTTCATCCAAGTTATCCTTATGTTCATGGCCACAATAGTAACTCTGCAGCTGAGATGTTCAGTGATGAGAACACAAGCAGCAGTTGCTCAATCATAAATCAGACTTTGATTTCTTGGTGTAAGGTAAGAAAAATCCGCGGCATTTTCATTTTTCATATGGTACCGCCAGAAATGTCCCTTCATCTCACTTATCCACTCCCGATATTCCCTCGCCGGAATGGCCTCCGGACCAAATCTCAGCCATCGCCCGCGAAGTCGATCGTCTCCTGCTCCGCTCTCAAACGCTACACCGCTGGATGTAAAAGGCAGTATACGAGTGTGATGATAGTTCCGACGGGCGTAGGCGCAGCCATTGGTGGATACGCAGGCGACGCTCTCCCGGTTGCTCGTGCCCTCGCCTCCGTCGTTGATTGCCTTATAACTCACCCTAATGTGCTAAATGCAGCAATGCTTTACTGGCCGATGCACAATGTGCTTTATGTTGAAGGCTATGCACTAGATCGGTTTGCAGAAGGTTCATGGGCCCTAGAGCCTGTTCACCAGAATCGGGTAGGATTGGTTCTTGATGCTGGAATGGAGGAAGAGCTTCGAATTCGTCACTTGCAAGTGGCTGATGCTGCTAGAGCTTCTCTTGGATTGCCTGTGATGGAATATGTTGTCACAGATACACCTCTAATGGTAGAGAAGTGGATTGATCCAAAAACTGGGCAATCAACTGGGAGGATAAGACATCCTGCCTCACTGCTTAGAGCCGTGCAGACATTAATGAACCGGTCGAAGGTGAATGCGGTTGCAGTTGTTGGACGATTCCCAGATGACGATGATGAAGAGACAGATAATTATCGACAAGGGATGGGAGTTGATACTTTGGCAGGGGTTGAGGCTATTATTAGCCATCTTGTGGTGAAGGAGTTTCAGATTCCATGTGCTCATGCTCCTGCTTTGTCACCTACTCCCTTATGCACATCTCTATCTCCAAAATCAGCAGCAGAGGAGTTAGGATTCACATTCTTACCATGTGTACTTTCTGGGCTAAGTAATGCGCCTCAATACTTGAGCAAGAATTCTCAATCATTGGGGAAGGACTGCATATTTGCAGATGATGTTGATAGTGTCATTGTACCTATAAATGCATGTGGAGGGGATGGCACTCTTGCTTTTGCCAGAAGCAAACAGTACAAGCCACTTATTATTGCAGTCGAGGAAAATGAAACAGTTCTCAGAGATTCTCCAGAGTCACTTGGGATTGAGGCGGTAAAAGTCTCAAATTATTGGGAAGCCATAGGTGTTGTTGCAGCTCACAAGGCAGGAATAGATCCTTATTCCCTTCGAAGAAATAGGATCAACAACATTAATTGCATTTCCAGTACATCTCCTAATGGCCACGCAGTCTCAAGATCTGTTGAATTCACCTACAAAAGTTGTTTATACATATTCAACACCTATTCACCAGGGAGGTCGATCGCCGGCGCCGGAGACGTCATGAAGACAGACTGCACCGATCTCATTCGTCGGATCGCTCTCCTGATTCATCTGGCGGAGGAGATCACAAACTTCTGCAGCGGAAGCAGGGAGAATATTGAGGCATTGAATGATGATGGGTCTTCTTGTTCGTCGTCTTGGTTGGATTGCCTTTCGGAAGTGGTCGGAGCAATTCAGGCGGCGAAGCGGCTTCTGTACACGGCTTTGACTTTCTCTGTGTGCGACGAGGAGGGTTGTGCGACTTCAACGGAGGGAGCTACTAAAAAATTGGTTCTACAATTCCAATACGTGACAACAAGATTGGAAACTGCACTCTCAAATCTGCCATACGACCACTTTTGTGTCTCAGATGAAGTACAAGAACAGGTTGATTTGGTTAGAGCTCAACTGAGGAGAGCATCAAACAAGTACGAATCTATGTCTAACCCTGAAGAAAAGAAGTTTCAAGCTAGGTCAGGTTCCGTAAAATGGATGATCAGTAATGATGTCAAGAGCATGTCTAGTGTTGATGATGGAGATGTCGAGTCTCAGCATCATCGTCCTCGGAACCGCGACCACCTGACTAGTTTCGATTCTTTGAATTCTTGCTTTGATGAGTGTTCAAGTGTTGTTCATTCTGATATGGAAGATGTTATAGCAAGCAAGAGCCAAGATGAGGTTAAGAAGCCCGTTGAAATTGAAATTCCTGAAAACTTCCTATGCCCCATTTCCTTTGAGTTGATGTTGAATCCCGTCATTGTCTCTACAGGACAGACATATGAAAGATCCAACATACAGAATTGGATAGACAGAGGAAATAGAATATGTCCAAAAACTCAGGAGCAGCTCCAATCTCTTATCCTCACTCCAAATTTTGTTATGAGAAAATTGATCTCTGAATGGTGTGAAGAGCATAATGTGAAGCTAGAGGAAGGATTAACCAACAGGAAACTAAAGAAGTATAGATCATTTGAGGAAGATTGCCAAAGGACTCTGCCGATCAAAACTCTGGTTCGACACCTTTCATTCGGGTCGATTCAGGAGCAGAAGATAGCCGTGACCGAGATCCGAAAGCTATCGAAAAGCAGCTCAGATCATAGAGTTGAAATAGCAGAAGCAGGAGCAATCCCACAACTGGTTAACCTTTTAACTTCAAAAGATGTTGCAACACAAGAGAATGCAATTTCTTGCATTCTCAACCTTTCACTTCAAGAGCAAAACAAGAGACTTATTATGCTTTCTGGTGCTGTTTCTTACATTTCGCAAGTCCTCAAAGTTGGGAGCATGGAAGGGAGAGAGTGTGCCGCCGCAACAATTTACAGCTTGTCATTAGCCGATGAGAACAAGGCGATAATCGGGGCTTCCGGAGTGATCCCGGAGCTGTTAGAAATCCTTGAGATCGGTAGCCCGAGAGGGCAGAAAGATGCTGCAGGAGCTCTATTGAATTTGTGTATGCACCAAGGGAATAAGGGCAGGGCTTTGAAGGCTGGGATTGTCAAACCATTGTTGAAAATGCTCTCTGATTCAAATGGTTCTTTGGTTGATGATGCTCTCTATATAATGTCGGTACTTTGCGGCCATCCAGAGGCGAAGGCTGCGATGTCGAATGCGAATTCGCTGCTTGTTTTGACTGACATTCTGAAGACGGGGTCACCTCGCAGCAAGGAAAATGCAGCTGCTGTTCTGCTTGCATTGTGCAAGGGAGATTGGGAGAAGCTGGAATGGTTAACCAGACTTGGCGTGGTGGTGTCGTTGATGAAACTTGCCAATAATGGCACGGCGAGAGCGAGGCGGAAGGCTGCTTTATTGTTGGACCAACTCGGAAAATCATGA 4371 45.07 MTKEDDFKLLKFQTCDLRVNIHCDGCRQKVKKLLQRIEGVFQVAIGAENQKVTVLGNVDPATLINKLVRAGKHAELWSQKANSSPKPKNKDDKTPNKEPKHLKLTSFNCEDDDIVDCVEEGEDYEAAQLQFRAANLDLLRQQAIEANNAGKGIGINRIPGLAGGNGKMNNNNININNKPGNGKKIDPNQPMAIKDTPSEIDRKTLAALKMNNAQLFGNSRESINLGEAKRANNNDLSSMMSMAGFNGGNLLNFATPSSIDVNSTNTSQGLHLQQNNGYGYGYQPSSTSGFSMATGQYHQQQQQPTFINGYNQYHQQQPLMNMNNMVSRQAMNQQPQMMYNRAQLVPPNTGYYFNYNPSPVHPSYPYVHGHNSNSAAEMFSDENTSSSCSIINQTLISWCKVRKIRGIFIFHMVPPEMSLHLTYPLPIFPRRNGLRTKSQPSPAKSIVSCSALKRYTAGCKRQYTSVMIVPTGVGAAIGGYAGDALPVARALASVVDCLITHPNVLNAAMLYWPMHNVLYVEGYALDRFAEGSWALEPVHQNRVGLVLDAGMEEELRIRHLQVADAARASLGLPVMEYVVTDTPLMVEKWIDPKTGQSTGRIRHPASLLRAVQTLMNRSKVNAVAVVGRFPDDDDEETDNYRQGMGVDTLAGVEAIISHLVVKEFQIPCAHAPALSPTPLCTSLSPKSAAEELGFTFLPCVLSGLSNAPQYLSKNSQSLGKDCIFADDVDSVIVPINACGGDGTLAFARSKQYKPLIIAVEENETVLRDSPESLGIEAVKVSNYWEAIGVVAAHKAGIDPYSLRRNRINNINCISSTSPNGHAVSRSVEFTYKSCLYIFNTYSPGRSIAGAGDVMKTDCTDLIRRIALLIHLAEEITNFCSGSRENIEALNDDGSSCSSSWLDCLSEVVGAIQAAKRLLYTALTFSVCDEEGCATSTEGATKKLVLQFQYVTTRLETALSNLPYDHFCVSDEVQEQVDLVRAQLRRASNKYESMSNPEEKKFQARSGSVKWMISNDVKSMSSVDDGDVESQHHRPRNRDHLTSFDSLNSCFDECSSVVHSDMEDVIASKSQDEVKKPVEIEIPENFLCPISFELMLNPVIVSTGQTYERSNIQNWIDRGNRICPKTQEQLQSLILTPNFVMRKLISEWCEEHNVKLEEGLTNRKLKKYRSFEEDCQRTLPIKTLVRHLSFGSIQEQKIAVTEIRKLSKSSSDHRVEIAEAGAIPQLVNLLTSKDVATQENAISCILNLSLQEQNKRLIMLSGAVSYISQVLKVGSMEGRECAAATIYSLSLADENKAIIGASGVIPELLEILEIGSPRGQKDAAGALLNLCMHQGNKGRALKAGIVKPLLKMLSDSNGSLVDDALYIMSVLCGHPEAKAAMSNANSLLVLTDILKTGSPRSKENAAAVLLALCKGDWEKLEWLTRLGVVVSLMKLANNGTARARRKAALLLDQLGKS 1456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6553085 6567219 - CcPI632755_01g006390.1 Cco01g0639 169501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0639 1456 Gene3D - 1278 1455 IPR011989 -
Cco01g0639 1456 MobiDBLite consensus disorder prediction 85 100 - -
Cco01g0639 1456 Pfam Heavy-metal-associated domain 17 73 IPR006121 GO:0046872(InterPro)
Cco01g0639 1456 ProSiteProfiles Heavy-metal-associated domain profile. 12 75 IPR006121 GO:0046872(InterPro)
Cco01g0639 1456 Pfam Armadillo/beta-catenin-like repeat 1209 1248 IPR000225 GO:0005515(InterPro)
Cco01g0639 1456 Pfam Armadillo/beta-catenin-like repeat 1292 1330 IPR000225 GO:0005515(InterPro)
Cco01g0639 1456 PANTHER OS01G0127400 PROTEIN 435 827 IPR021763 -
Cco01g0639 1456 SMART arm_5 1209 1249 IPR000225 GO:0005515(InterPro)
Cco01g0639 1456 SMART arm_5 1250 1290 IPR000225 GO:0005515(InterPro)
Cco01g0639 1456 SMART arm_5 1373 1413 IPR000225 GO:0005515(InterPro)
Cco01g0639 1456 SMART arm_5 1291 1331 IPR000225 GO:0005515(InterPro)
Cco01g0639 1456 SMART arm_5 1332 1372 IPR000225 GO:0005515(InterPro)
Cco01g0639 1456 Gene3D - 12 83 - -
Cco01g0639 1456 SUPERFAMILY ARM repeat 1180 1453 IPR016024 -
Cco01g0639 1456 CDD HMA 16 75 IPR006121 GO:0046872(InterPro)
Cco01g0639 1456 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1220 1262 IPR000225 GO:0005515(InterPro)
Cco01g0639 1456 ProSiteProfiles U-box domain profile. 1080 1154 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco01g0639 1456 Pfam U-box domain 1081 1152 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco01g0639 1456 SMART Ubox_2 1084 1147 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco01g0639 1456 Gene3D - 1162 1276 IPR011989 -
Cco01g0639 1456 SUPERFAMILY RING/U-box 1076 1154 - -
Cco01g0639 1456 SUPERFAMILY HMA, heavy metal-associated domain 14 78 IPR036163 GO:0046872(InterPro)
Cco01g0639 1456 Coils Coil 969 989 - -
Cco01g0639 1456 MobiDBLite consensus disorder prediction 75 100 - -
Cco01g0639 1456 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1080 1156 IPR013083 -
Cco01g0639 1456 Pfam Protein of unknown function (DUF3326) 464 803 IPR021763 -
Cco01g0639 1456 CDD RING-Ubox_PUB 1082 1134 IPR045210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0639 Cco-Chr1:6553085 Cco05g2381 Cco-Chr5:32309586 2.70E-50 dispersed
Cco07g0680 Cco-Chr7:11764052 Cco01g0639 Cco-Chr1:6553085 5.00E-97 transposed
Cco01g0639 Cco-Chr1:6553085 Cco05g2608 Cco-Chr5:34325847 9.10E-06 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0639 - - - 0.0