Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0662 ATGGAACACTTTTTGGGTCTTCTCCGAATTCGGGTGCTGCGCGGTGTTAATCTCGCTATTCGTGATTCTCGTAGCAGCGATCCTTATGTCGTCGTCACAATGGGTGAGCAGAGGTTGAAGACCCGGGTGGTGAAAAATAATTGCAATCCTGAATGGAACGATGAGTTGACTCTTTCAATTGCAGATCTCAGGACTCCAATCGGTATATCAGTGTATGACAAAGACACACTAACAGACCATGACAAAATGGGAGATGCCGAGATCGACATCGAACCATACATCGAATGTTTGACAATGGGACTGGAGAGCCTCCCAGATGGATGTGTGGTTAAGAGACAATTCAGCTCGAATGGATCGACGTTCCTGGTGCTAAGGGTTTGCCAGTCGGGGGTACAAGCAACTTCTGATTTGTTAACTGATGCATCAGGTTACTTTGATTACCAATTCTGGCAACTTGAAGACAAAGCATGA 471 45.86 MEHFLGLLRIRVLRGVNLAIRDSRSSDPYVVVTMGEQRLKTRVVKNNCNPEWNDELTLSIADLRTPIGISVYDKDTLTDHDKMGDAEIDIEPYIECLTMGLESLPDGCVVKRQFSSNGSTFLVLRVCQSGVQATSDLLTDASGYFDYQFWQLEDKA 156
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6774740 6776962 + CcPI632755_01g006620.1 Cco01g0662 169524

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0662 156 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 1 116 IPR044562 -
Cco01g0662 156 Pfam C2 domain 6 92 IPR000008 -
Cco01g0662 156 Gene3D C2 domain 4 129 IPR035892 -
Cco01g0662 156 SMART C2_3c 7 102 IPR000008 -
Cco01g0662 156 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 100 IPR035892 -
Cco01g0662 156 ProSiteProfiles C2 domain profile. 1 106 IPR000008 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0662 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0662 Cco-Chr1:6774740 Cco07g0645 Cco-Chr7:10394361 2.80E-38 dispersed
Cco01g0662 Cco-Chr1:6774740 Cco06g1624 Cco-Chr6:26838525 1.40E-34 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g452 . . . . . Bpe10g00983 Bma14g01888 . . . . Cma04g00062 . Car04g00059 . . Cpe01g01844 . . . . . . . . . . . . . . Cone13ag0750 . . . . Csa05g02017 Chy10g00230 . . . . . . . . . . . . . . . . . Cpe04g01368 Bhi12g00911 . . . . . . Cla01g00614 Cam01g0643 Cec01g0635 Cco01g0662 Clacu01g0632 Cmu01g0605 Cre09g1896 Lsi09g00665 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001861 2 4 3 4 3 2 2 2 2 3 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 5 2 1 68