Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0663 ATGAAGAGGGAGCATCACCATCTTCATCCCCGTCCGGAGCCGCTTTCCATGGCTGCCGTCCCTAATGGGGAGAGTTATTTGAACACTGGTAAGGCTAAACTCTGGGAGGAGGAAGCGCAGCTCGATGGAGGAGCGGATGAGCTTCTTGCTGTTTTGGGTTATAAGGTTAAGTCGTCGGACATGGCGGAAGTTGCTCAGAAGCTCGAACAGCTTGAAGAAGCGATGTGTCAAAATCAGGACACTGGCCTTTCGCATCTCGCTTTTGACACTGTTCATTATAATCCCTCTGATCTGTCAACTTGGCTTGAAAGTATGCTCATGGAGCTCCATCCGACGCCTAATTTTGCGCCGCTGCCACCTCCTTCGCAGCTGGACGATTCGTCGTTTTTAGCTCCGGCGGAATCCTCCACCATCACTTCCATTGATTACGACCCCCAACGGCAAACCAGCAATCGGATTTTCGAGGAATCTTCTAGTTCTGATTACGACCTTAAAGCTATCACAAGCAGCGCGATTTATTCACCGAGAGAGAATAAACGTTTGAAATCCTCTGAGTCGGACTCGGACTTGTTCTCCACCTCGGCGATTGGGGCTTCCGATTCTGTAACTCGCCCGGTCGTCCTCGTCGACTCGCAGGAGAATGGAATTCAACTGGTTCATGCTCTGATGGCTTGTGCCGAAGCTGTACAGCAGAACGATCTGAATCTAGCGGAGGCTCTGGTGAAGCGAATCGGTTACTTGGCGGTTTCTCAAGCCGGAGCGATGAGGAAGGTCGCCACGTTCTTCGCCGAAGCGTTGGCACGCCGAATCTACAGGCTCCGCCCTGAGAATCCCCTAGATCATTCAGTGTCCGATAGGCTTCAGATGCATTTCTACGAGAGCTGTCCATATCTGAAATTCGCGCATTTCACCGCGAATCAAGCGATTCTCGAAGCCTTCGAAGGGAAGAAGCGGGTTCACGTAATCGATTTCTCGATGAACCGAGGGATGCAGTGGCCGGCTCTGATTCAAGCCCTAGCTCTACGGCCAAACGGTCCTCCAGCCTTCCGCCTCACTGGAATTGGCCCTCCGGCGCCGGATAATTCAGATTACCTCCAAGAAGTGGGCTGGAAACTCGCTGAATTGGCCGAAGCTATCCATGTGGAGTTCGAGTACAGAGGATTTGTAGCGAATAGCTTGGCGGATCTGGACGCATCGATGCTGGAGCTCCGGCCGAGCGAGGTGGAATCGGTGGTGGTGAACTCAGTGTTTGAGCTGCATAAGTTACTCGCTCGGCCTGGTGCCCTCGAAAAGGTTCTGTCGGTGGTGAAGCAGATGAAGCCGGAGATCATAACGGTGGTGGAGCAGGAAGCCAACCACAACGGTCCGGTTTTCGTGGACCGGTTCACTGAGTCACTCCATTACTACTCGACGCTTTTTGACTCGTTGGAAGGCTCCCCCAACAACCAAGACAAGATCATGTCCGAAATGTACCTTGGGAAGCAAATTTGCAACGTTGTGGCTTGTGAAGGCGCGGACCGAGTGGAACGTCACGAGACCCTGACTCAGTGGCGGACTCGGTTGTCCTCTGCCGGGTTCGAACCCATCCACCTTGGCTCGAACGCATTCAAGCAAGCTAGTATGCTCCTCGCCCTATTCGGCAGCGGAGAAGGCTACCGGGTGGAAGAAAACAACGGATCACTAATGCTAGGGTGGCACACTCGCCCCCTCATCGCCACATCCGCCTGGAAACTCGGCAACAACCCGGTGGTCGCTCACTGA 1761 53.66 MKREHHHLHPRPEPLSMAAVPNGESYLNTGKAKLWEEEAQLDGGADELLAVLGYKVKSSDMAEVAQKLEQLEEAMCQNQDTGLSHLAFDTVHYNPSDLSTWLESMLMELHPTPNFAPLPPPSQLDDSSFLAPAESSTITSIDYDPQRQTSNRIFEESSSSDYDLKAITSSAIYSPRENKRLKSSESDSDLFSTSAIGASDSVTRPVVLVDSQENGIQLVHALMACAEAVQQNDLNLAEALVKRIGYLAVSQAGAMRKVATFFAEALARRIYRLRPENPLDHSVSDRLQMHFYESCPYLKFAHFTANQAILEAFEGKKRVHVIDFSMNRGMQWPALIQALALRPNGPPAFRLTGIGPPAPDNSDYLQEVGWKLAELAEAIHVEFEYRGFVANSLADLDASMLELRPSEVESVVVNSVFELHKLLARPGALEKVLSVVKQMKPEIITVVEQEANHNGPVFVDRFTESLHYYSTLFDSLEGSPNNQDKIMSEMYLGKQICNVVACEGADRVERHETLTQWRTRLSSAGFEPIHLGSNAFKQASMLLALFGSGEGYRVEENNGSLMLGWHTRPLIATSAWKLGNNPVVAH 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6788263 6790023 - CcPI632755_01g006630.1 Cco01g0663 169525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0663 586 MobiDBLite consensus disorder prediction 1 21 - -
Cco01g0663 586 Gene3D - 44 109 IPR038088 -
Cco01g0663 586 ProSiteProfiles GRAS family profile. 209 577 IPR005202 -
Cco01g0663 586 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 180 576 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009723(PANTHER)|GO:0009737(PANTHER)|GO:0009863(PANTHER)|GO:0009867(PANTHER)|GO:0009938(PANTHER)|GO:0010187(PANTHER)|GO:0042538(PANTHER)|GO:0043565(PANTHER)|GO:2000033(PANTHER)|GO:2000377(PANTHER)
Cco01g0663 586 Pfam Transcriptional regulator DELLA protein N terminal 46 113 IPR021914 -
Cco01g0663 586 Pfam GRAS domain family 218 577 IPR005202 -
Cco01g0663 586 Coils Coil 54 74 - -
Cco01g0663 586 FunFam DELLA protein GAI 44 109 - -
Cco01g0663 586 SMART DELLA_2 46 119 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0663 Cco-Chr1:6788263 Cco03g0873 Cco-Chr3:10432190 5.70E-193 dispersed
Cco01g0663 Cco-Chr1:6788263 Cco02g2141 Cco-Chr2:34191314 8.00E-46 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58586 PF03514 GRAS 6.30E-136 CL0063 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0663 K14494 - csv:101204164 1096.65