Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0664 ATGAACTGCTCCCTTGGCCTTCACATCCCCAAGGCCTTGCCTTCTCTCTCCTCTTCCAAAACCCTTTTTCCTTCTCTCTCTTCTTCCTTTAAGCTTCACAATTTGAATTTGCCCTCCAATTCAAACCCCAACAATTTTGAGATTGTGGGAAGCATCAGAGAAGATCCCATTGCCTATCTTCACCAACACAAAACTAGTTTGGCTCTTCAACTTGCAGCCCTTTTAGCCACTGTTGGGGAGGCAGCAAATGCAGTAACAGGAGACAACAACCATGAAGTTCCACTAACATGGATTTTGACACAATTGGGCATTGTTGGATTCTTCTACTTTCTTATCTTTCCTCCAATCATCATGAACTGGCTGAGGATAAGATGGTATAGAAGAAACTTGTTGGAAATGTACCTCCAATTCATGTGTGTCTTCCTCTTCTTCCCTGGGATTCTATTGTGGGCGCCATTTCTGAACTTCAGAAAGTTTCCACGAGATCCATCGATGAAGTATCCATGGTCGACGCCGGAAGAGCCATCTCAGATAAAAAATGCATACTTGAAGTACCCATTTGCTAAGCCTGAAGATTATGACTGGGCCCAAACTAATTGCACATTTTCTCTAATAATTAGTTTGAAGTTCAGAGTCCACTTTTTAAAATCCAAATTTTGTTTAATTGTTGAGGGAATAATTTGTGATTTTTGCACTGGTTTTCTACTGATGCCTCGAAGGCCAACAAAGCGGCGCCGGCTGCTGGGAACTCCTCGACCTTTAACTTTTTCCTCATTTGCTCGAACTTCTTGTATGGTGAGGAATCAACATTTGAAGTCGAAAGTAATGGAATCTCACCCTAAACATGAAGGTAATGGTTTTATTAGGAATAGTCCTGAGCCTCAGAGTGAATCATCTGACTCTTCTTCCAGTGAAGAGTTTGAAGAAGTTCAAGCAGACTTTGCCTTTTTTGATCCAAAACCTGATGATTTTCATGGGGTGAAGACATTGCTGCAGAACTACCTAGATGACACACAGTGGGATATCAGTGGATTTTCTGATTTAATATTGGGACAAACCACAGTTGGTAGTGTTGTCAAAGTAGAGGGGGATGAAGATAATGGAGTATTCTCTTTTATCACAGCCCTTAACTTGGAAAGATATAAGGACAGTAGATCTATACTGGAGCTCAAGGGGTATCTCTCCAAAGTTTGCCAGGACAAGAATATAAAGAATGACTTGAAACAACTTCTGGAGGAGCAAGCATCCAGTGTAGGTCTCATCGTCTCTCAGAGAATTGTGAATCTTCCACCACAACTTCTGCCACCACTTTATGATGCCCTTTTTGATGAAATCTCTTGGGCTATTGAGGATGAGCCAACTAAAGAGCTCCAGGATTCCTTCCGCTTCAAATTGTATATTTTAGTCAGTAAAATTTACAAGCTCAAGACTACAAATCATAAGAAAAAACCAACTCCTGAAACAGAAGAACCAATTATCTATGTTAAGGCAGAAGATGAAATATTTCACAAGTTGTGCTTATGGTCCTTCTGCTTTCCCTTGCACATCCAACCACAGACAACTAACGAGCTAAAAGGTTACCAGTTAATGGGAATAGTAATGGCTGTCGAAGCAAGCAAAGTTCCCACATTTCGAGATGAGTTGAAATCTTTAATAAGTGAATCATAG 1668 40.71 MNCSLGLHIPKALPSLSSSKTLFPSLSSSFKLHNLNLPSNSNPNNFEIVGSIREDPIAYLHQHKTSLALQLAALLATVGEAANAVTGDNNHEVPLTWILTQLGIVGFFYFLIFPPIIMNWLRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIKNAYLKYPFAKPEDYDWAQTNCTFSLIISLKFRVHFLKSKFCLIVEGIICDFCTGFLLMPRRPTKRRRLLGTPRPLTFSSFARTSCMVRNQHLKSKVMESHPKHEGNGFIRNSPEPQSESSDSSSSEEFEEVQADFAFFDPKPDDFHGVKTLLQNYLDDTQWDISGFSDLILGQTTVGSVVKVEGDEDNGVFSFITALNLERYKDSRSILELKGYLSKVCQDKNIKNDLKQLLEEQASSVGLIVSQRIVNLPPQLLPPLYDALFDEISWAIEDEPTKELQDSFRFKLYILVSKIYKLKTTNHKKKPTPETEEPIIYVKAEDEIFHKLCLWSFCFPLHIQPQTTNELKGYQLMGIVMAVEASKVPTFRDELKSLISES 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6821318 6830200 + CcPI632755_01g006640.1 Cco01g0664 169526

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0664 555 MobiDBLite consensus disorder prediction 275 304 - -
Cco01g0664 555 Pfam NADH dehydrogenase transmembrane subunit 90 162 IPR019654 GO:0016655(InterPro)
Cco01g0664 555 PANTHER BRCA2 AND CDKN1A INTERACTING PROTEIN 273 553 IPR025602 GO:0005634(PANTHER)
Cco01g0664 555 Pfam BCCIP 309 502 IPR025602 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0664 K15262 - - csv:101218410 459.529
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g455 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo15g01001 . Cma15g00961 . Car15g00907 Cpe13g00363 . Bhi12g00916 . . . . . . Cla01g00618 Cam01g0646 Cec01g0638 Cco01g0664 Clacu01g0634 . . Lsi09g00668 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007192 1 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 5 2 1 35