Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0665 ATGTTGGCCTCTGCAATTTCAATACCCACCAATTTCAACTTCCCCCTTTCCTATTCTCAACGCACACTCTCAATCATTCACATGAAGCTTTTTCCAGTTGGCGCCATGGGAATTTCTAAACCCATAGATCATTCGCTCTTTCTCTATCGTTCTCGGTTCTCTTCAGAATCTCTCTCGAAACGCGTTGTTTGCAGGCGTGTTAGCAGTGATGGTGGTGGTGCTGTTGATTCTACACAGCAGCAGTCTGCAGCTCCTGGCATCAAAGATGTACAGAATGATTCTTCTAGTGTTGGAGACAGTTATGTGGCATTATTTGTCCGGATGCTCGGCTTGGATCATGATCCTCTTGATAGAGAACAAGCAATCATAGCTTTATGGAAATATTCCCTTGGAGGGAAGAAGCACATAGATGCCATCATGCAGTTTCCTGGATGCATAAATCTGACAGTAAATCTTCTTAGGTCAGAGTCAATCTCTACGTGTGAAGCAGCTGCTGGCCTTCTACGGTCAATTTCTCTGGTGAACTTATACCGAGATTCAGTTGCAGAAAGTGGAGCAATTGAAGAGATAACTGGCTTGCTTACTCAACCGTCCTTGACTCCCGAGGTGAAGGAGCAAAGCATCTGCGTTTTGTGGAATTTGTCAGTAGATGAAAAACTCAGAACTAAGATTGGAAACACCGATATTCTGCCATTGCTTAGTAAGAATCTTGATGATGAGGACATGAAGGTGAAAGAAGCAGCTGGAGGGGTTATAGCAAATCTGGCTTTGAGCCCATGTAACCATGGGGTTATTGTCGAATCAGGCTTGATTCCTAAACTGGCGTATCAGTTGAAAGCTGAGGCAGACAGCTCAAAAATTTTGAGAAAGGAAGCAAGAAATGCATTGCTTGAACTTTCTAACGATGAATATTATAGAATTCTTGTCATAGAGGAAGGACTGGTTCCAGTACCAATTCTTGGTGCTGCTGCCTATAAATCCTTCAGACCAGGCCTGCATTCATGGCCCAGTTTGCCTGATGGCACAGAAATTGAACAATCTTCCAAAGAACCTTCAAGATTTGGTGCCTCTGAATTACTCCTTGGGTTAAATGTTGACAATAATGCAAACATAGAAGAAGGCAAGATAAATGCAATTGTTGGACGGACACAGCAACAGTTTCTGGCTCGAATAGGTGCCATAGAACTTGAAGTTCTGAAGGACTCTCAATCTGAATCATCTACCAGTAACCATCTTACACTCTTACCTTGGATAGATGGCGTGGCTCGACTAGTTTTAATCCTTGAACTTGAGGATATTAATGCCGTAGTGAGAGCTGCAGAGTCAATCGCTGATGCATGTATCAATGAACACATGCGTATTTCATTCAAGGAAGCTGGAGCAATCAAACATTTAGTCAAGTTTTTAGATTATATGAATAATTCTGTCAAATGGGCTACAGTTCAAGCTCTAGAGAGACTATCGATTAGCAATGTTGTTTGCCTGGCAATTGAAAATGAAGGTGCACTTGGTCCTTTGCTCAGTATTTTAAAGCTCTCAAGTATCCCTGAAAATGTGATGGAGAAGACCCTCGATATACTTACTCGGATCTTGGACCCTAGTAAAGAAATGAAATCAAAGTTTTACAGTGGACCGGTAAACGGGTCTCAAGGAGGACAACATTCAGAAAGCAATTTTGAAGCTTCTACCAGGAAAGATGTGCTGGATATTGATGTTGTTTCTCGCCTGGTTGAGATTTTGAACTCCTCATCCCCAAACTTGAAACGGAAAGCTGCTTCTATCCTGGAATTTGTTTCTATTATGGACCCAAGCATGGAAATAATCGATTCCATGGAGATAGAGTCTGGATTGTCGGCTGTTTTCCAGCTTGGAGTTTCAATAGATTCTGATGCTGAAGATTGGCAGCCTGAAAGATATGCGCTTGAAGTTGAGGAAGCTGGTCTTGCAATTTCAGCAGCCTCCCGACTATTAACAAAGCTTCTAGATTCTGAAAAGTTCTGCAACAAAATAAACTCCACCCATTTCACTAAGTTGCTTCGTCGAATCCTGAAGTCGGACATTCCCATTAACCACAAAGATTGGATTGCTGCTTGCCTAATCAAAGTCTGCTCCATTTCAGCTCTGAACACGGATTCCGGAGATCCTATTAACATGGAGGTCACTCTGTACGAAACTATACCGAGACTTATTCAACAGATCAAAAGCTCCTTCTCCCTGGAAGTTCAGGAATCTGCTGTTGTGGAGCTGAACAGAATAGTCTCAGAGGGCATAGTCGATGCTACCCGAGCTGTTGCTTCAAAAGGCGGTATCTTTCCATTGGTAAAGCTGATCAATGAAGGAAGTGAGAGGGCAACAGAAGCAGCCTTAGCCATACTGTATAATCTGAGCATGGATACTGAGAATCATCCAGCAATTATAGCTGCAGGAGCCGTGCCAGCATTGAAGAAAATTGTTCTATCGCAACGAGCGCAGTGGCGACAAGCTCTTTATTTGTTGAGGACGTTGCCTACATGA 2514 42.84 MLASAISIPTNFNFPLSYSQRTLSIIHMKLFPVGAMGISKPIDHSLFLYRSRFSSESLSKRVVCRRVSSDGGGAVDSTQQQSAAPGIKDVQNDSSSVGDSYVALFVRMLGLDHDPLDREQAIIALWKYSLGGKKHIDAIMQFPGCINLTVNLLRSESISTCEAAAGLLRSISLVNLYRDSVAESGAIEEITGLLTQPSLTPEVKEQSICVLWNLSVDEKLRTKIGNTDILPLLSKNLDDEDMKVKEAAGGVIANLALSPCNHGVIVESGLIPKLAYQLKAEADSSKILRKEARNALLELSNDEYYRILVIEEGLVPVPILGAAAYKSFRPGLHSWPSLPDGTEIEQSSKEPSRFGASELLLGLNVDNNANIEEGKINAIVGRTQQQFLARIGAIELEVLKDSQSESSTSNHLTLLPWIDGVARLVLILELEDINAVVRAAESIADACINEHMRISFKEAGAIKHLVKFLDYMNNSVKWATVQALERLSISNVVCLAIENEGALGPLLSILKLSSIPENVMEKTLDILTRILDPSKEMKSKFYSGPVNGSQGGQHSESNFEASTRKDVLDIDVVSRLVEILNSSSPNLKRKAASILEFVSIMDPSMEIIDSMEIESGLSAVFQLGVSIDSDAEDWQPERYALEVEEAGLAISAASRLLTKLLDSEKFCNKINSTHFTKLLRRILKSDIPINHKDWIAACLIKVCSISALNTDSGDPINMEVTLYETIPRLIQQIKSSFSLEVQESAVVELNRIVSEGIVDATRAVASKGGIFPLVKLINEGSERATEAALAILYNLSMDTENHPAIIAAGAVPALKKIVLSQRAQWRQALYLLRTLPT 837
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6831914 6838351 + CcPI632755_01g006650.1 Cco01g0665 169527

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0665 837 Gene3D - 640 835 IPR011989 -
Cco01g0665 837 MobiDBLite consensus disorder prediction 72 95 - -
Cco01g0665 837 Gene3D - 88 324 IPR011989 -
Cco01g0665 837 MobiDBLite consensus disorder prediction 68 95 - -
Cco01g0665 837 SUPERFAMILY ARM repeat 651 827 IPR016024 -
Cco01g0665 837 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 185 218 IPR000225 GO:0005515(InterPro)
Cco01g0665 837 SMART arm_5 449 489 IPR000225 GO:0005515(InterPro)
Cco01g0665 837 SMART arm_5 757 797 IPR000225 GO:0005515(InterPro)
Cco01g0665 837 SMART arm_5 174 216 IPR000225 GO:0005515(InterPro)
Cco01g0665 837 SMART arm_5 217 257 IPR000225 GO:0005515(InterPro)
Cco01g0665 837 SMART arm_5 258 301 IPR000225 GO:0005515(InterPro)
Cco01g0665 837 SMART arm_5 712 754 IPR000225 GO:0005515(InterPro)
Cco01g0665 837 SMART arm_5 798 837 IPR000225 GO:0005515(InterPro)
Cco01g0665 837 SMART arm_5 490 532 IPR000225 GO:0005515(InterPro)
Cco01g0665 837 SMART arm_5 133 173 IPR000225 GO:0005515(InterPro)
Cco01g0665 837 SMART arm_5 560 600 IPR000225 GO:0005515(InterPro)
Cco01g0665 837 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 54 837 - -
Cco01g0665 837 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 768 810 IPR000225 GO:0005515(InterPro)
Cco01g0665 837 SUPERFAMILY ARM repeat 101 596 IPR016024 -
Cco01g0665 837 Gene3D - 397 623 IPR011989 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0665 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g458 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g02014 . . . . . . . . . . . . Cmo15g00939 . Cma15g00902 . Car15g00841 Cpe13g00362 . Bhi12g00918 . . . Hepe02g2639 . . Cla01g00619 Cam01g0647 Cec01g0639 Cco01g0665 Clacu01g0635 Cmu01g0608 Cre09g1893 Lsi09g00669 . Chy09g00841 Cme09g01373
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011868 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 30