Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0669 ATGTCTTGCTCCCAAACCCCTTATCCAGACCTCTGCTTCCATTACATAAACTCGAACAACCACGCATCGACTGCCGGTATTGGTGAAACTTCTCTCATTGTCACTCACTTTCAAAACTCAGCCCTTCGATCCACTTTGAACCAAGCCATGATTGTCCATGACCATCTTCGCTCCGCCATGGTTCTTGATTCATTTGATGACGACGACAGAACTAAATTCGCTTTAATCGATTGTTTGGAACTCTATGAGGATTCGATCGCAGAGCTCAATCATTCGGCAATCAGTTCCATGAATGTCAATTCGATTGACCACTTGACGTTGTTAAGTGCTTCATTAGCGAACCATCAAACATGTCAAGATGGATTTCGAGATTTTGGATTTTCGTCTGATGATTTGAATAATTTCTTTTTTCCATTTCAAATTTTTAGTAACTTCTCAAAATTGGTTAGCAATTCTCTTGCCATCACGAAGGCCGCCACGGCAGCCGCCGCCACTAGTTCCTCCAACTCCGGTGGCCGACGGTTGTTAGGTGGCTCGTTTCCCAAGTGGGTTTACAATGATGATAGGATGCTCCTTCAGGGCATGGTCGGGAATCGCGCAGATATGGTGGTCGCCCAAGATGGAAGCGGCAATTTTAGGACGATATCGGAGGCGGTGGCTGCGGCGGAGGAGGCGAGGAAGGGAAGTGGAAGGTTTGTTATATATGTAAAAGGTGGGATTTACAAAGAGAATGTTGTGATTAAGAAGAGGATGAAGAATATAATGATGATTGGAGATGGGATTGATAGGACGATCGTCACGGCGATGAAGAACGTCCAAGATGGATCAACTACTTTCCGATCAGCCACTTTTGCGGTGGCCGGCGAAGGATTCATCGCCAAAGACATGACGTTCGAGAACACGGCGGGGCCAGAGAAACACCAAGCTGTCGCACTCCGATCTAATGCTGATCGCTCACTTTTCTACCGATGCAGCTTCAAAGGCTACCAAGACACTTTGTATGCCCACTCCAACCGCCAGTTCTATCGTGAATGCCACATTTACGGAACTGTCGACTTCATTTTCGGCGACGGCGTTGCTGTTTTTCAAAACTGCAACATCTTTGTCAGAAAGCCGATGATGCACCAAAAAAATACCATCACGGCGCAGGCGAGGTCGGACCCAAATGAGAACACCGGGTTCGTGATCCACAATTCCGTCATCGGAGCAGCGCCGGACTTGAAGCCGGTGGAGGGTATGTACGGAACTTATTTGGGGAGGCCATGGAAGGTGTATTCGAGGACAGTGATAATGAAGAGTTTTTTGGATGGTCTGATTGAACCGGCCGGGTGGCTTCCTTGGGCCGGAGATTTCGGTCCGAGGACGGTTTATTATGGCGAGTTTATGAACGCTGGTGGTGGAGCAAATACGAAAGGGAGGGTGCGGTGGCCGGGATACCATGTGATGACGAGTGCGGCGGAGGCTGAGAGGTTCACGGTGGAGAGTTTCTTGGAAGGAGGAGGTTGGATTCCGGCCACCGGAGTGCCATTTGCAAATGGGCTATGA 1545 48.87 MSCSQTPYPDLCFHYINSNNHASTAGIGETSLIVTHFQNSALRSTLNQAMIVHDHLRSAMVLDSFDDDDRTKFALIDCLELYEDSIAELNHSAISSMNVNSIDHLTLLSASLANHQTCQDGFRDFGFSSDDLNNFFFPFQIFSNFSKLVSNSLAITKAATAAAATSSSNSGGRRLLGGSFPKWVYNDDRMLLQGMVGNRADMVVAQDGSGNFRTISEAVAAAEEARKGSGRFVIYVKGGIYKENVVIKKRMKNIMMIGDGIDRTIVTAMKNVQDGSTTFRSATFAVAGEGFIAKDMTFENTAGPEKHQAVALRSNADRSLFYRCSFKGYQDTLYAHSNRQFYRECHIYGTVDFIFGDGVAVFQNCNIFVRKPMMHQKNTITAQARSDPNENTGFVIHNSVIGAAPDLKPVEGMYGTYLGRPWKVYSRTVIMKSFLDGLIEPAGWLPWAGDFGPRTVYYGEFMNAGGGANTKGRVRWPGYHVMTSAAEAERFTVESFLEGGGWIPATGVPFANGL 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6941135 6943588 - CcPI632755_01g006690.1 Cco01g0669 169531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0669 514 ProSitePatterns Pectinesterase signature 1. 228 247 IPR018040 -
Cco01g0669 514 Gene3D - 197 514 IPR012334 -
Cco01g0669 514 PANTHER PECTINESTERASE 2 505 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cco01g0669 514 FunFam Pectinesterase 196 514 - -
Cco01g0669 514 NCBIfam pectinesterase inhibitor domain 2 157 IPR006501 GO:0004857(InterPro)
Cco01g0669 514 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 2 157 IPR035513 -
Cco01g0669 514 CDD PMEI-like_3 2 153 - -
Cco01g0669 514 ProSitePatterns Pectinesterase signature 2. 347 356 IPR033131 -
Cco01g0669 514 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 159 IPR035513 -
Cco01g0669 514 Pfam Pectinesterase 201 499 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cco01g0669 514 SUPERFAMILY Pectin lyase-like 199 512 IPR011050 -
Cco01g0669 514 SMART PMEI_2 1 155 IPR006501 GO:0004857(InterPro)
Cco01g0669 514 Pfam Plant invertase/pectin methylesterase inhibitor 2 155 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0669 Cco-Chr1:6941135 Cco05g0884 Cco-Chr5:7629229 4.60E-130 dispersed
Cco01g0498 Cco-Chr1:4847802 Cco01g0669 Cco-Chr1:6941135 3.60E-138 transposed
Cco09g2268 Cco-Chr9:36944807 Cco01g0669 Cco-Chr1:6941135 1.70E-57 transposed
Cco10g0571 Cco-Chr10:7365276 Cco01g0669 Cco-Chr1:6941135 1.80E-115 transposed
Cco01g0669 Cco-Chr1:6941135 Cco05g2471 Cco-Chr5:33141794 3.10E-102 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0669 - - - 0.0