Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0677 ATGGGAGACGTGAAGGACAAGGTCAAGGGTTTCATGAAAAGGTTTAATAATACGTTGTCCTCATCTTCTTCTTCGTCAAGTTTCAAGGGCCAGGGAAGAGTTTTAGGATCGTCTTCTTCTGGGTCGACTAGTTCTATGCCTACCCGCCCATCGCGTAATCCCATTTCAAAGCCGAACCCGGTTAATCCACCTTCAGGTTCTAAGCCCCCGCTTGTGAAGTCGATTGCCAATGGTCAAAACAGGTCACACCTATCGAATAAATCGAACCCAGATCGTAAACCGGCCGATGGATTTGACCCATTTGACTCGTTTATAACATCTGGGAAAAGATCTGGAAATGGGTATTCCTTAAATGTGTTTGAATGTCCGATTTGTGGCCAAAGTTATAGGTCTGAAGAAGAGGTTTCGGTGCACGCAGATAGCTGTGTCAACGATAGTACAGCCAAGGGAGCTGAAGATCCACCTACGAGTGATGCAGAATCTCGGAGTGAATTGGAGGCTTGTGTTGCCACTTTCTTATCCGGGAAGCCATCACAAGGTTCATTGGATATTGTTCTGAAGCTTTTGAGGAACATAGTTCGGGAACCAGAGAATTCAAAGTTTAGGAAAATTCGTCTGAGTAATCCCAAAATTAAGGAGGCAATCGGTGAGGCTGTGGGGGGAGTGGAATTGTTGGAGTTTGTAGGTTTTAAATTGCAAGAGGAAGATGGTGAAATGTGGGCAATCATGGACGTTCCAACAGAGGAAGAAATTAACCTATTAAGTAAGGTAATAGATTCGATTGACCGGCCAAAGCTTGATGAACAGCAAAAGAAAGCCAGCACTGCATCTGCACTGATTGAACCAAAGAAGGTAGACAGACAGATTCGGGTATTCTTTGCTGTCCCTGAAAACGTTGCAGCCAACATTGAACTACCAGACTCCTTCTACAAACTCTCTGTTGAAGAGGTTAAAAGAGAAGCTATAATGAGGAAGCAAAAGTTTGCTGAATCTCAGCTTTTGGTTCCCAAATCATACAAGGAAAAACAGGCAAAAGCTGCTAGGAGGAAGTACACAAGAACAGTTATCAGAATTCAATTTCCCGACGGCGTGGTACTTCAAGGTGTTTTTTCTCCTTGGGAACCGACAATTGCGCTATATGAGTTTGTGAGCACAGCACTGAAAGAACCCGGCTTGGAATTCGAGTTGATACATCCTGTCGGTGTTAAGCAGCGTACAATCGCTCATTTTCCCGCAGAAGGAGAGAGATCTAAAACACTAGATGATGAGGAGTTAGTTCCTTCAGCTCTGGTCAAGTTTAGACCAATTGAAACAGATTCAATTGTCTTCACAGGTTTGCGTAACGAACTCCTTGAGATAATCGAACCACTCGTTAGCAGTTCAGCCGTGGCTCCTCCTGCACAAGTTTAA 1410 44.18 MGDVKDKVKGFMKRFNNTLSSSSSSSSFKGQGRVLGSSSSGSTSSMPTRPSRNPISKPNPVNPPSGSKPPLVKSIANGQNRSHLSNKSNPDRKPADGFDPFDSFITSGKRSGNGYSLNVFECPICGQSYRSEEEVSVHADSCVNDSTAKGAEDPPTSDAESRSELEACVATFLSGKPSQGSLDIVLKLLRNIVREPENSKFRKIRLSNPKIKEAIGEAVGGVELLEFVGFKLQEEDGEMWAIMDVPTEEEINLLSKVIDSIDRPKLDEQQKKASTASALIEPKKVDRQIRVFFAVPENVAANIELPDSFYKLSVEEVKREAIMRKQKFAESQLLVPKSYKEKQAKAARRKYTRTVIRIQFPDGVVLQGVFSPWEPTIALYEFVSTALKEPGLEFELIHPVGVKQRTIAHFPAEGERSKTLDDEELVPSALVKFRPIETDSIVFTGLRNELLEIIEPLVSSSAVAPPAQV 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7053970 7057650 - CcPI632755_01g006770.1 Cco01g0677 169539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0677 469 MobiDBLite consensus disorder prediction 15 100 - -
Cco01g0677 469 SUPERFAMILY PUG domain-like 177 241 IPR036339 -
Cco01g0677 469 SMART PGNneu 180 247 - -
Cco01g0677 469 Pfam PUB domain 179 249 IPR018997 -
Cco01g0677 469 ProSiteProfiles UBX domain profile. 349 433 IPR001012 GO:0005515(InterPro)
Cco01g0677 469 FunFam UBX domain-containing protein 6 343 434 - -
Cco01g0677 469 MobiDBLite consensus disorder prediction 15 52 - -
Cco01g0677 469 MobiDBLite consensus disorder prediction 53 67 - -
Cco01g0677 469 CDD PUB 167 263 - -
Cco01g0677 469 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 460 - GO:0050832(PANTHER)
Cco01g0677 469 Gene3D - 343 435 - -
Cco01g0677 469 SUPERFAMILY Ubiquitin-like 321 433 IPR029071 -
Cco01g0677 469 Gene3D - 174 263 - -
Cco01g0677 469 Pfam UBX domain 350 429 IPR001012 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0677 Cco-Chr1:7053970 Cco11g1300 Cco-Chr11:25573307 7.70E-07 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58587 PF00789 UBX 9.20E-05 CL0072 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0677 K14011 - csv:101209321 813.527