Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0681 ATGTTTCGAGGGCTTCGTAGCATGTTCTCAAGACTGACAGTTAAACCTTTGAAGTTCCCGCCAGAAATTCAAAGGATTCTTTGCAATTTCGAAATGAATAAAATCTTCCGGATAATGAATATCAATATTTCAACTCATGAATTACTCAATTCCACTCTGAGAAGTCCTAAATTTCTCACTCCGCTTCTACTCTTTCATGGTTCCAACAAGAATCTGACCTCAGATTCGGAGCTGGAACTCGATTCTGACAAGCTCGGTTATCGGTCTTCTATACCCACTTCTCGAAGAAGATGGGTTTCTGAAGAACAGGTTGATCTCAGGGAGATTTCAAAAGGAAGGGAGTTGAAGGTTCAGATAGACCCATGGCCGGAGTGGGTGGACTTCATGGAATGTTTGTCAAAGAAAGGGTACTTTGAAGGAGACAGAGTCCCATTTCTTAATGCCGAGTTGGGTGCAAAAGATTTCAATCATATTCGGACTGCGTGTCTTGATTTTGCAAGGGATCGGTCTAACCTTATACGGCGCTTGTCCAGGAAAGATTTACAGGTGATTGCAGGATGTGGATGCCCAAGCACAGATAGGAAAGTTGTGAACTCAGGGAAGCGTCTCAGAGCACATGTGGGCATTGATGAGGGAAATGTCTGCAGTTCTTGCAACCTGCGGGGAGAATGTGAGAGGGCATATGCGAAGGCATGCGGAGATGAAGGATGTCAGACTGTGGATGTCATGCGCGTTTTGTTATTTTATGGGCTTGATCACATCTCTGCTATGGTGGAGAGCAGACCATGTTGGAACAAGAAGGCCAATGACTCTGTTAGAAAGCTGTTGAAAGATATTGTTGAATATAGTGCAGGAGAACGTGAATCTGATCTTCTTACGTCTAACGAGGCTACTTCAGCAGGAAATCATGAGACAAGTGCTTCAGCGACACGAGGCGACTGGCATTGTCCAAAATGCAACTTTTTCAACTTTTCTAGAAACATCAAGTGCTTGCGCTGTGGTAGTATACCCCTCAAGAGACTTCGGAAACTAAATGAGGATCAAGTTGATCTTCCGTTGAAGAAGGGTGACTGGATTTGTGACAAGTGTAATTTCTTGAACTTTGCTAAGAATTCAACATGTTTGCAATGCAAAGAGAAGCCTTTGAATCGACAGCTGAATCAAGGGGAGTGGGAATGCGAATCGTGCAACTATATCAATTTTAGAAAGAATACGTTATGCTTGAAGTGTGATCACCGACGACCGAAAGCACTAAATACTCGAAACGTCTCTGCTGTTCCTGCAGCTGAGAATGGAAACTACAGTTTCAGTAAGCCTAAATTCTCATCTGGTAAAGTTGGTAATAATAATGCAAGTAGGAAAAATGATGGTTGTATGTGGAGATTTGGTGAAAATGAGGGTGAAGATGATTCTGGACTTGTGGATTTTCCTATTGCTCGTTCTTCTGGAAGTGCAGAAAGACAAGAAAGAAGGAAAGTGGAGATGTTAGAAAGGAGAAAAAACATGGAAAATGCAATAGATAAAGAAGAAGATCTAATCTTGAGATCTGACAATATCGAAAGAAGATTTGAGTTTGTTGAATCTACTGATGATGAAGACATCATCGAATGGTTTGGACACAAGCCAGAATCAAGCAAATAG 1641 41.93 MFRGLRSMFSRLTVKPLKFPPEIQRILCNFEMNKIFRIMNINISTHELLNSTLRSPKFLTPLLLFHGSNKNLTSDSELELDSDKLGYRSSIPTSRRRWVSEEQVDLREISKGRELKVQIDPWPEWVDFMECLSKKGYFEGDRVPFLNAELGAKDFNHIRTACLDFARDRSNLIRRLSRKDLQVIAGCGCPSTDRKVVNSGKRLRAHVGIDEGNVCSSCNLRGECERAYAKACGDEGCQTVDVMRVLLFYGLDHISAMVESRPCWNKKANDSVRKLLKDIVEYSAGERESDLLTSNEATSAGNHETSASATRGDWHCPKCNFFNFSRNIKCLRCGSIPLKRLRKLNEDQVDLPLKKGDWICDKCNFLNFAKNSTCLQCKEKPLNRQLNQGEWECESCNYINFRKNTLCLKCDHRRPKALNTRNVSAVPAAENGNYSFSKPKFSSGKVGNNNASRKNDGCMWRFGENEGEDDSGLVDFPIARSSGSAERQERRKVEMLERRKNMENAIDKEEDLILRSDNIERRFEFVESTDDEDIIEWFGHKPESSK 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7089377 7093494 - CcPI632755_01g006810.1 Cco01g0681 169543

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0681 546 ProSitePatterns Zinc finger RanBP2-type signature. 314 333 IPR001876 -
Cco01g0681 546 ProSiteProfiles Zinc finger RanBP2 type profile. 354 377 IPR001876 -
Cco01g0681 546 ProSitePatterns Zinc finger RanBP2-type signature. 358 377 IPR001876 -
Cco01g0681 546 Pfam Zn-finger in Ran binding protein and others 389 411 IPR001876 -
Cco01g0681 546 Pfam Zn-finger in Ran binding protein and others 354 378 IPR001876 -
Cco01g0681 546 Pfam Zn-finger in Ran binding protein and others 312 335 IPR001876 -
Cco01g0681 546 SUPERFAMILY Ran binding protein zinc finger-like 349 379 IPR036443 -
Cco01g0681 546 SUPERFAMILY Ran binding protein zinc finger-like 306 336 IPR036443 -
Cco01g0681 546 ProSiteProfiles Zinc finger RanBP2 type profile. 310 335 IPR001876 -
Cco01g0681 546 SMART zf_4 356 380 IPR001876 -
Cco01g0681 546 SMART zf_4 389 413 IPR001876 -
Cco01g0681 546 SMART zf_4 312 336 IPR001876 -
Cco01g0681 546 ProSiteProfiles Zinc finger RanBP2 type profile. 387 416 IPR001876 -
Cco01g0681 546 SUPERFAMILY Ran binding protein zinc finger-like 383 416 IPR036443 -
Cco01g0681 546 ProSitePatterns Zinc finger RanBP2-type signature. 391 410 IPR001876 -
Cco01g0681 546 Coils Coil 485 512 - -
Cco01g0681 546 Gene3D - 346 381 - -
Cco01g0681 546 Gene3D - 303 337 - -
Cco01g0681 546 Gene3D - 382 417 - -
Cco01g0681 546 PANTHER ZINC FINGER PROTEIN 349 420 - GO:0003729(PANTHER)|GO:0005737(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0681 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0681 Cco-Chr1:7089377 Cco06g1620 Cco-Chr6:26808915 1.80E-44 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g489 . . . Bda11g00183 Bpe13g01010 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0370 . . Csa05g01992 . . . . . Bda11g00183 . . . . . . Cmo15g01024 . Cma15g00977 . Car15g00923 Cpe13g00350 Cpe04g01365 Bhi12g00936 . . . Hepe02g2626 . . Cla01g00635 . . Cco01g0681 Clacu01g0651 Cmu01g0625 Cre09g1879 Lsi09g00684 . Chy09g00823 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011612 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29