Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco01g0687 | ATGTCTTCCCCATCCTTTCCTCCTTCCATGGAGCCTCCCGCCCAACAGATCCCTCTCTTACCTTCCCGTCAGCCCTCCAACTCTGACGGCTCCACTTCCCCCATCGGCCCCCTCGCCCTTCTCTTGGGCCGCGCCACTGGCCGCCGTGGAACTTCTATGCTGGTTCGGGAAACGGCGGCACGTGAACTTGAAGAGCGCCGCATCGATTGGGGCTATTCCAAGCCTGTGGTAGCCCTTGACATTACGTGGAATTTAGCTTTTGTTTTCGTTTCGCTGGGTGTGCTTATTCACTCCGCCGATGAAAAACCCAATACCCCAATTCGGCTTTGGATGGTTGTTTATGCGGCTCAGTGCTTGGTGCACGCTGTGCTTGTGTGGTTTGAATTCAGAAGGAGGAATGCGAGGACGGCTAGGGATATGGAGACGCAGCAACAGCAGCAGTCTGATGGATATGTAACTAATGAAAGCGATGAAGAAGATGGTAGCCCCAGGAACATGTCTGGTGTTGTGAAAAGATGCGAGTCAGTAAACACTCTGGTATCGTTAATTTGGTGGTTGTTTGGCTTTTACTGGGTTGTGGCTGGTGGTAACATCCTCATGCAGAATGCCCCATCTTTATACTGGCTGGCTGTCGTATTCTTGGCATTTGATGTGTTCTTTGCAGTCTTTTGTGTTGTTTTGGCATGTTTGATAGGAATTGCTCTCTGTTGCTGCTTGCCTTGCATTATAGCTATTCTTTATGCTGTTGCAGGCCAGGAAGGTGCAACCGATGCTGATTTAAGTATGCTTCCTAGATATCGGTATCAAGTGTCCAATGAGCCTTCTCCGGGGGATGGGTTGATGGTTCCAGTAGAAACTAGCAGTAGATACTTGACTACTGAGCGTGTTCTATCACGCGAGGATGCGGAGTGCTGTATATGTCTTAGTCCATATGAGGATGGAGCCGAGCTTCATGCTCTTCCCTGCAATCACCATTTTCATTATGCGTGTATCACAAAATGGCTGAAGATGAATGCAACATGTCCTCTGTGCAAGTACAATATTCTAAAAAATTCTGAACCTGTGTAA | 1068 | 48.69 | MSSPSFPPSMEPPAQQIPLLPSRQPSNSDGSTSPIGPLALLLGRATGRRGTSMLVRETAARELEERRIDWGYSKPVVALDITWNLAFVFVSLGVLIHSADEKPNTPIRLWMVVYAAQCLVHAVLVWFEFRRRNARTARDMETQQQQQSDGYVTNESDEEDGSPRNMSGVVKRCESVNTLVSLIWWLFGFYWVVAGGNILMQNAPSLYWLAVVFLAFDVFFAVFCVVLACLIGIALCCCLPCIIAILYAVAGQEGATDADLSMLPRYRYQVSNEPSPGDGLMVPVETSSRYLTTERVLSREDAECCICLSPYEDGAELHALPCNHHFHYACITKWLKMNATCPLCKYNILKNSEPV | 355 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 7146901 | 7150683 | - | CcPI632755_01g006870.1 | Cco01g0687 | 169549 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco01g0687 | 355 | Pfam | Ring finger domain | 303 | 345 | IPR001841 | - | |
Cco01g0687 | 355 | SUPERFAMILY | RING/U-box | 291 | 350 | - | - | |
Cco01g0687 | 355 | ProSiteProfiles | Zinc finger RING-type profile. | 304 | 345 | IPR001841 | - | |
Cco01g0687 | 355 | SMART | ring_2 | 304 | 344 | IPR001841 | - | |
Cco01g0687 | 355 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Cco01g0687 | 355 | FunFam | E3 ubiquitin protein ligase RIE1 | 284 | 352 | - | - | |
Cco01g0687 | 355 | CDD | RING-H2_PA-TM-RING | 303 | 345 | - | - | |
Cco01g0687 | 355 | MobiDBLite | consensus disorder prediction | 138 | 166 | - | - | |
Cco01g0687 | 355 | PANTHER | TARGET OF ERK KINASE MPK-1 | 43 | 349 | - | GO:0000325(PANTHER)|GO:0006511(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER) | |
Cco01g0687 | 355 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
Cco01g0687 | 355 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 251 | 350 | IPR013083 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco01g0687 | Cco-Chr1:7146901 | Cco05g0218 | Cco-Chr5:1693574 | 4.40E-87 | dispersed | |
Cco01g0687 | Cco-Chr1:7146901 | Cco07g1584 | Cco-Chr7:29864992 | 6.20E-09 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco01g0687 | - | - | - | 0.0 |