Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0689 ATGGCTACGATGGAGAGCTTGATCGGTTTAGTCAACCGAATCCAGCGAGCCTGCACTGTCTTGGGAGATCATGGCGGCGAGGGAATGTCCCTCTGGGAAGCTCTTCCTTCCGTCGCCGTCGTGGGAGGACAGAGTTCCGGTAAATCTTCAGTGCTGGAAAGCGTGGTCGGTAGAGACTTTCTTCCTCGTGGATCCGGCATTGTAACACGAAGACCATTGGTGTTGCAACTTCATAAGACAGATGAAGGACGATCTGAATATGCAGAGTTTCTCCATGCCCCAAAGAAGAAGTTCGCTGATTTTGCTTCCGTGCGTAAAGAAATATCAGATGAGACTGATCGGATTACTGGGAAGTCAAAGCAAATCTCAAATGTGCCAATTCATTTGAGCATATATTCTCCAAATGTTGTAAACTTAACACTCATAGATCTTCCTGGGTTGACAAAGGTTGCTGTAGAAGGACAACCTGAGTCTATTGTTGAAGATATTGAAAACATGGTCCGCTCTTATGTTGAGAAACCTAATTGCATTATACTTGCAATTTCTCCTGCTAATCAAGATATTGCAACTTCAGACGCTATAAAGCTTGCAAGGGAAGTTGATCCCTCAGGTGAAAGAACGTTTGGAGTGCTTACAAAACTCGACTTGATGGACAAGGGAACTAATGCTCTGGATGTTCTTGAAGGAAGAGCATACAGGTTGCAGCATCCATGGGTTGGGATTGTAAATCGTTCACAAGCTGATATTAATAAGAATGTAGACATGATTATTGCGCGCAAAAAGGAGCGTGAGTATTTTGAAACAAGCCCCGAGTATGGACACCTAGCCCATAAGATGGGCTCAGAGTATCTTGCGAAACTTTTGTCCCAGCACTTGGAGAGGGTTATCAGGCAACGGATTCCAAGTATCATTGCATTGATAAATAAGACAATTGACGAACTGAATGCAGAGCTGGACAGAATTGGCAGACCTATAGCAGTAGATTCGGGGGCACAACTGTACACTATTTTAGAAATGTGTCGTGCTTTTGACCGTGTATTCAAGGAACATCTTGATGGAGGGCGGCCTGGTGGAGATAGAATATACGGGGTTTTTGACCATCAACTACCTGCTGCCCTGAAGAAATTACCTTTTGATCGTCATCTTTCTTTAAAAAATGTCCAAAAAGTTGTGAGTGAAGCTGATGGTTACCAACCTCATTTAATTGCTCCAGAACAAGGATACAGGAGGCTAATTGATGGTTCAATCAGCTATTTCAAGGGTCCGGCTGAAGCTTCTGTTGATGCTGTGCATTTTGTATTAAAAGAACTTGTTCGTAAATCTATAGCTGAAACAGAGGAACTGAAAAGATTTCCAACACTTCAATCTGACATTGCAGCAGCTGCAACAGAGGCATTGGAGCGATTTCGCGAAGAAAGTCGAAAAACAGTTCTACGGTTGGTTGATATGGAGTCTAGCTACCTCACCGTAGATTTTTTCCGAAAGCTGCATATGGAACCAGACAAAAATCCTAATCCTAGCCAAGCAGGGCCAAATGCGGACCGTTATACAGATAACCATTTCAGAAGGATTGGTTCAAACGTGAGTTCTTATATTGGGATGGTTTGTGACACACTGAAAAATTCAATTCCGAAGGCTGTTGTCTACTGTCAAGTTCGAGAGGCCAAGAGATCATTGCTGAACCATTTTTATGTTCAAGTTGGGAAAAGGGAGAAGGAACGGCTTGGTGCTATGTTGGATGAGGATCCAGCACTGATGGAGAGAAGAACAACCATAGCTAAAAGACTTGAGCTTTACAAGTCAGCTCGAGACGAAATTGACTCAGTTGCCTGGAAATGA 1839 43.39 MATMESLIGLVNRIQRACTVLGDHGGEGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTDEGRSEYAEFLHAPKKKFADFASVRKEISDETDRITGKSKQISNVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPNCIILAISPANQDIATSDAIKLAREVDPSGERTFGVLTKLDLMDKGTNALDVLEGRAYRLQHPWVGIVNRSQADINKNVDMIIARKKEREYFETSPEYGHLAHKMGSEYLAKLLSQHLERVIRQRIPSIIALINKTIDELNAELDRIGRPIAVDSGAQLYTILEMCRAFDRVFKEHLDGGRPGGDRIYGVFDHQLPAALKKLPFDRHLSLKNVQKVVSEADGYQPHLIAPEQGYRRLIDGSISYFKGPAEASVDAVHFVLKELVRKSIAETEELKRFPTLQSDIAAAATEALERFREESRKTVLRLVDMESSYLTVDFFRKLHMEPDKNPNPSQAGPNADRYTDNHFRRIGSNVSSYIGMVCDTLKNSIPKAVVYCQVREAKRSLLNHFYVQVGKREKERLGAMLDEDPALMERRTTIAKRLELYKSARDEIDSVAWK 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7165057 7173972 + CcPI632755_01g006890.1 Cco01g0689 169551

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0689 612 ProSiteProfiles GED domain profile. 521 612 IPR020850 -
Cco01g0689 612 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 32 301 IPR030381 GO:0005525(InterPro)
Cco01g0689 612 Pfam Dynamin GTPase effector domain 518 609 IPR003130 GO:0003924(InterPro)|GO:0005525(InterPro)
Cco01g0689 612 CDD DLP_1 35 301 IPR001401 GO:0003924(InterPro)|GO:0005525(InterPro)
Cco01g0689 612 MobiDBLite consensus disorder prediction 499 518 - -
Cco01g0689 612 SMART GED_2 516 609 IPR003130 GO:0003924(InterPro)|GO:0005525(InterPro)
Cco01g0689 612 Pfam Dynamin family 38 214 IPR045063 -
Cco01g0689 612 FunFam dynamin-related protein 1E 4 310 - -
Cco01g0689 612 PANTHER DYNAMIN 5 609 IPR022812 GO:0003924(PANTHER)|GO:0005737(PANTHER)|GO:0005874(PANTHER)|GO:0008017(PANTHER)|GO:0016020(PANTHER)
Cco01g0689 612 FunFam Dynamin-related protein 1C 332 589 - -
Cco01g0689 612 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 309 IPR027417 -
Cco01g0689 612 Gene3D Dynamin, middle domain 334 589 - -
Cco01g0689 612 Gene3D - 4 310 IPR027417 -
Cco01g0689 612 Pfam Dynamin central region 222 490 IPR000375 -
Cco01g0689 612 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 61 70 IPR019762 -
Cco01g0689 612 PRINTS Dynamin signature 133 150 IPR022812 -
Cco01g0689 612 PRINTS Dynamin signature 225 244 IPR022812 -
Cco01g0689 612 PRINTS Dynamin signature 60 77 IPR022812 -
Cco01g0689 612 PRINTS Dynamin signature 202 218 IPR022812 -
Cco01g0689 612 PRINTS Dynamin signature 35 53 IPR022812 -
Cco01g0689 612 PRINTS Dynamin signature 183 201 IPR022812 -
Cco01g0689 612 SMART dynamin_3 4 252 IPR001401 GO:0003924(InterPro)|GO:0005525(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0689 K27686 - - csv:101212826 1180.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0689 Cco-Chr1:7165057 Cco09g1287 Cco-Chr9:14106067 1.80E-274 dispersed
Cco01g0689 Cco-Chr1:7165057 Cco05g0332 Cco-Chr5:2680937 1.10E-298 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g501 . Blo16g00754 . Bda11g00186 Bpe13g01007 . . . . . . . . . . . Cpe01g01825 . . . . . . . . . . . . . . . . Cone6ag0359 Cone9ag0389 . . . . . . . Bda11g00186 . . . Bma06g01131 . . . . . . . . . Bhi12g00950 . . . Hepe02g2616 . . Cla01g00644 Cam01g0671 Cec01g0663 Cco01g0689 Clacu01g0660 Cmu01g0633 Cre09g1872 Lsi09g00692 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000261 5 7 3 6 5 5 6 5 5 5 4 4 4 6 5 6 4 8 5 5 5 5 5 5 5 4 4 8 5 5 154