Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0703 ATGGGTATGAAAATGCAGCAGGGCAACAACGCTGTGGCTATGAAGTGTAACGAGCAAATGGGAACAACAAAGAAGGGTTACACATTTGTTGAAGCTAACAGGGCTTGGCTTAGAAAGTATCTTCTATTCTGGATTATGGGGATGGCGTTTATCAGCATGTTAATCTATAATGGCATGGATGCTGATAATAAAGTGAGGAGGAACGAAGTGTTGGGGAGCATGTGCGAGCAGAGAGCAAGGATGTTGCAGGATCAATTCAGTGTTAGTGTTAACCATGTTCATGCTTTGGCTGTCCTTGTTTCCACCTTTCATTACTTCAAAAACCCTTCTGCTATTGATCAGGAAACTTTTGCAGAATACACAGCCAGAACTGCTTTTGAACGGCCTCTACTCAGTGGGGTGGCGTATGCACAAAGAGTGATTCATTCAGAAAGAGATATCTTTGAAAAGCAACACGGGTGGATGATAAAAACAATGAAAAGAGAACCTTCGCCAATTCGAGATGAATATGCACCAGTAATATTTTCTCAAGAAACAGTCTCATATATTGAATCACTGGATATGATGTCAGGAGAGGAGGACCGTGAGAATATTTTGAGGGCTAGAGCAACAGGAAAGGCTGTTTTAACAAGCCCCTTCAGGCTGCTGGGTTCTCATCATCTTGGAGTTGTTTTGACGTTTCCCGTTTACAAGTCCAAATTGCCATCTAAACCAACCGAAGAAGATCGGATTGAAGCAACAGCAGGCTACGTTGGTGGAGCCTTTGATGTTGAGTCACTTGTGGAGAACTTGCTTGGGCAGCTTGCAGGGAATCAGGCCATTTTGGTGAACGTATATGATGTCACAAACTCTTCTGATCCCCTCGTCATGTATGGTCATCAATATCAAGATGGTGACTTGTCTCTTTTGCATGAGAGTAGCCTTGATTTTGGAGATCCATTCAGGAAGCATTTGATGATTTGTAGATATCAGCAGAGGGCTCCCACATCCTGGACTGCCCTGACTACAGCATTCTTATTCTTCGTGATCGGGTTGTTAGTTGGATATATTTTGTATGGTGCAGCAACTCACATTGTGAAGGTTGAAGATGATTTTCATGAGATGAAAAAACTGAAATTTCGCGCGGAGGCTGCTGATGTGGCAAAATCCCAGTTTCTTGCAACTGTTTCTCACGAAATTAGGACACCAATGAATGGCATCCTTGGAATGCTTGCTCTGCTTCTGGATACAGATTTAAGTTCTACACAGAAGGATTATGCTCAGACTGCTCAGGCTTGTGGAAAGGCACTGATAGCATTAATAAATGAGGTTCTTGACCGGGCCAAAATTGAAGCTGGAAAGTTAGAACTGGAAGCAGTTCCATTTGACATTCGATCAATACTCGATGATGTGCTATCTTTATTTTCCGAGAAGTCCAGACAAAAGGGTCTGGAGCTGGCAGTTTTTGTTTCTGATAAAGTTCCAGAAATTGTTATTGGAGATCCTGGAAGATTCAGACAAATTATAACAAATCTTGTGGGTAACTCTGTTAAGTTTACTGAAAGGGGACATATATTTGTTAAAGTACACCTAGCTGAGCATTCTAAAGGCTCCATTGACTCAAAATATGTCAATGGAATATCTGACAGTGACTTATTCATATCGGGTGGTCGTGAATTTCAAACTTTGAGTGGATGTGAGGCAGCCGATGACCAGAACAGCTGGGATAACTTTAAACATCTGATTGCTGATGAGGACTTCCAGTTGAATGGCACTCCAAACAACATGGTAGTTTCCGAGGGTTGTGGTCATGTTACTTTGATGGTAAGTGTGGAGGATACTGGAATTGGGATCCTCTTACATGCCCAAAATCGAGTTTTCATGCCTTTCATGCAAGCAGATAGCTCGACCTCCCGCAATTATGGGGGGACTGGTATTGGCTTGAGTATCAGCAAATGTTTAGTTGAACTAATGGGTGGTCAGATCAACTTCATAAGCCGGCCTCAGATTGGAAGCACGTTTTCCTTCACTGCTGTTCTAGGAAAATGTAAGAAGAATTCAATCAATGATATGAAAAAACCCAGCTCTGAAGAACTTCCCCCCAGTTTTAGAGGAATGAAAGCAATCATAGTTGACAGGAAACATGTTAGAGCTTCTGTGACCAGATATCATTTGAAGAGACTTGGTGTTATAGTTGAAGTCACCAGTAGCATCAACATGGCAGCTTCTTTATGCAGAGAAAATGGATCCACAGTGCCAGGAAACTCAATCCTTCCAGATATGATCTTAGTTGAAAAAGACACACTAAAGTCCGATGAGGAATGTGGGATCATTCATCAACTGAATGGGAGTTCGTTTAAGTTACCGAAGCTGATCCTTCTTGCTACAAATATTACCACTGCAGAACTAGACAAGGCAAGAGCAGCAGGTTTTGCAGACACCGTGATCATGAAGCCGTTAAGGGCGAGTATGGTGGCTGCCTGTCTTCAACAAGTACTCGGGGTTAAGAATCAGAGACGGGGAAGTGGCCTACCGAACGGTTCTGCTTTCCTCCAGAGCCTTCTCTGTGGCAAGAGAATCTTAATTGTTGATGACAACAGAGTAAACCGTAGGGTCGCTGCAGGCGCTCTGAAGAAATTCGGTGCGGATGTTGAGTGTGCAGATAGTGGGAAAGCTGCCCTGAAGTTGCTTCAGCTACCGCACAATTTCGATGCTTGCTTCATGGATATTCAAATGCCTGAAATGGATGGGTTTGAGGCAACTCGTCTTATCAGGATGATGGAGAACAAGGCAAACGAAGGAGGACCGTCTGCAGCGGAAGGCAAGTGGCATATGCCGATATTAGCAATGACTGCAGATGTGATTCATGCTACGTATGATGAATGCCTGAAATGCGGAATGGATGGCTACGTGAAAAGAGCCGGAGGCAAAATCTCCATTGCAGACCTCTTTTATGGTGGGTTGGAAGTACCAGCAAGTTTTGACACCATTGCTGGTGCTAACTGTCTTCTTGCTTCGACGAGAGCGTCGGGAATTCTTGACTGGCATTGA 3030 43.56 MGMKMQQGNNAVAMKCNEQMGTTKKGYTFVEANRAWLRKYLLFWIMGMAFISMLIYNGMDADNKVRRNEVLGSMCEQRARMLQDQFSVSVNHVHALAVLVSTFHYFKNPSAIDQETFAEYTARTAFERPLLSGVAYAQRVIHSERDIFEKQHGWMIKTMKREPSPIRDEYAPVIFSQETVSYIESLDMMSGEEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPSKPTEEDRIEATAGYVGGAFDVESLVENLLGQLAGNQAILVNVYDVTNSSDPLVMYGHQYQDGDLSLLHESSLDFGDPFRKHLMICRYQQRAPTSWTALTTAFLFFVIGLLVGYILYGAATHIVKVEDDFHEMKKLKFRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQKDYAQTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDIRSILDDVLSLFSEKSRQKGLELAVFVSDKVPEIVIGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAEHSKGSIDSKYVNGISDSDLFISGGREFQTLSGCEAADDQNSWDNFKHLIADEDFQLNGTPNNMVVSEGCGHVTLMVSVEDTGIGILLHAQNRVFMPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQIGSTFSFTAVLGKCKKNSINDMKKPSSEELPPSFRGMKAIIVDRKHVRASVTRYHLKRLGVIVEVTSSINMAASLCRENGSTVPGNSILPDMILVEKDTLKSDEECGIIHQLNGSSFKLPKLILLATNITTAELDKARAAGFADTVIMKPLRASMVAACLQQVLGVKNQRRGSGLPNGSAFLQSLLCGKRILIVDDNRVNRRVAAGALKKFGADVECADSGKAALKLLQLPHNFDACFMDIQMPEMDGFEATRLIRMMENKANEGGPSAAEGKWHMPILAMTADVIHATYDECLKCGMDGYVKRAGGKISIADLFYGGLEVPASFDTIAGANCLLASTRASGILDWH 1009
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7357528 7363857 - CcPI632755_01g007030.1 Cco01g0703 169565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0703 1009 SMART HKATPase_4 493 675 IPR003594 -
Cco01g0703 1009 Gene3D - 59 111 - -
Cco01g0703 1009 FunFam Histidine kinase 4 112 327 - -
Cco01g0703 1009 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 435 670 IPR036890 -
Cco01g0703 1009 CDD HisKA 381 442 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cco01g0703 1009 ProSiteProfiles Response regulatory domain profile. 852 981 IPR001789 GO:0000160(InterPro)
Cco01g0703 1009 Gene3D - 354 444 - -
Cco01g0703 1009 Pfam CHASE domain 111 291 IPR006189 -
Cco01g0703 1009 Pfam Response regulator receiver domain 853 965 IPR001789 GO:0000160(InterPro)
Cco01g0703 1009 PRINTS Bacterial sensor protein C-terminal signature 635 653 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cco01g0703 1009 PRINTS Bacterial sensor protein C-terminal signature 659 672 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cco01g0703 1009 PRINTS Bacterial sensor protein C-terminal signature 600 614 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cco01g0703 1009 PRINTS Bacterial sensor protein C-terminal signature 618 628 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cco01g0703 1009 ProSiteProfiles Response regulatory domain profile. 700 826 IPR001789 GO:0000160(InterPro)
Cco01g0703 1009 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 367 447 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Cco01g0703 1009 Pfam His Kinase A (phospho-acceptor) domain 381 446 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cco01g0703 1009 Coils Coil 431 451 - -
Cco01g0703 1009 CDD REC_hyHK_CKI1_RcsC-like 853 964 - -
Cco01g0703 1009 ProSiteProfiles CHASE domain profile. 108 320 IPR006189 -
Cco01g0703 1009 CDD HATPase_EvgS-ArcB-TorS-like 498 673 - -
Cco01g0703 1009 Gene3D - 445 678 IPR036890 -
Cco01g0703 1009 Gene3D CHASE domain 112 327 IPR042240 -
Cco01g0703 1009 SUPERFAMILY CheY-like 695 828 IPR011006 -
Cco01g0703 1009 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 598 670 IPR003594 -
Cco01g0703 1009 Gene3D - 843 973 - -
Cco01g0703 1009 SUPERFAMILY CheY-like 850 964 IPR011006 -
Cco01g0703 1009 ProSiteProfiles Histidine kinase domain profile. 388 675 IPR005467 -
Cco01g0703 1009 PANTHER TWO-COMPONENT HISTIDINE KINASE 33 964 IPR050956 -
Cco01g0703 1009 SMART CHASE_2 108 293 IPR006189 -
Cco01g0703 1009 SMART HisKA_10 381 446 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cco01g0703 1009 SMART REC_2 851 977 IPR001789 GO:0000160(InterPro)
Cco01g0703 1009 FunFam Histidine kinase 4 353 444 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0703 Cco-Chr1:7357528 Cco11g0125 Cco-Chr11:1321306 0.00E+00 dispersed
Cco01g0703 Cco-Chr1:7357528 Cco02g0290 Cco-Chr2:2629916 9.30E-276 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58590 PF02518 HATPase_c 2.00E-31 CL0025 Cco TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0703 K14489 - csv:101209777 1815.43