Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0710 ATGGACGCCGCCGCTTCCAACCGCCCTGTCGGAGTTCTCCTCTGCCTTGTTATTGCGTTAAGCGGCGTCGTTTTTACTGATGCGGAGCTTCGACGATTTCCCCATCCCTCCAAAGACGACGGCTCTCTCAGCCTTCTGGTCGTCGGAGACTGGGGACGAAACGGAGAATACAACCAATCTCAAGTTGCCGTTCAGATGGGGATCATCGGAGAAAAATTGGAGGTCGATTTCGTAATTTCAACCGGCGATAATTTTTACGATAGGGGACTAAAGGGTACCGACGATCCGGCATTTGAAGAGTCATTTTCCAAAATATACACCGCACCAAGCTTGCAAAAGGAGTGGTACAGTGTTTTGGGCAATCATGATTATAGAGGAGATGTTGAGGCCCAATTGAGTCCAATTTTGAGAAAATTGGATAATAGGTGGATTTGCTTGAGATCTTTCATTGTTGATACAGAAATTGTGGAGTTTTTCTTTGTGGACACAACCCCCATTGTGGACAAGTATTTTATTGATCCTGAAGATGAGGTTTATGATTGGAAGGGTGTTTTACCAAGACGAAATTACATTTCTAGCCTTCTCAAGGAATTGGATTCAGCAATAAAGGATTCAAATGCAAAATGGAAAATAGTTGTGGGACATCACACTTTGAAAAGTGCTGGGAGTCATGGTGATACTCAAGAACTACTTCACCACCTTCTACCCATTCTTGAGGAAAATAAAGTGGATTTCTATGTGAATGGACATGACCACTGCTTGCAACATATAAGCAGCATTAGCAGCCCACTTCAATATTTTACAAGTGGGGGAGGATCAAAGGCATGGAAGGGAGAAATAAATTGGATGGATCCAAAAGAGTTGAAGTTTTATTATGATGGGCAAGGCTTCATGTCCTTACAAGTCACTCATTCACAGGCAAACTTTACATTCTTTGACATTTTTGGCAATGTTTTGCACCAATGGACCTCCACCAGGCCACTTCTTCACTCTGTCATTTGA 1002 43.01 MDAAASNRPVGVLLCLVIALSGVVFTDAELRRFPHPSKDDGSLSLLVVGDWGRNGEYNQSQVAVQMGIIGEKLEVDFVISTGDNFYDRGLKGTDDPAFEESFSKIYTAPSLQKEWYSVLGNHDYRGDVEAQLSPILRKLDNRWICLRSFIVDTEIVEFFFVDTTPIVDKYFIDPEDEVYDWKGVLPRRNYISSLLKELDSAIKDSNAKWKIVVGHHTLKSAGSHGDTQELLHHLLPILEENKVDFYVNGHDHCLQHISSISSPLQYFTSGGGSKAWKGEINWMDPKELKFYYDGQGFMSLQVTHSQANFTFFDIFGNVLHQWTSTRPLLHSVI 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7472529 7477318 - CcPI632755_01g007100.1 Cco01g0710 169572

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0710 333 FunFam Purple acid phosphatase 38 331 - -
Cco01g0710 333 PIRSF Acid_Ptase_5 8 332 IPR024927 GO:0003993(InterPro)
Cco01g0710 333 Gene3D - 38 330 IPR029052 -
Cco01g0710 333 SUPERFAMILY Metallo-dependent phosphatases 42 324 IPR029052 -
Cco01g0710 333 CDD MPP_ACP5 43 316 IPR024927 GO:0003993(InterPro)
Cco01g0710 333 Pfam Calcineurin-like phosphoesterase 45 253 IPR004843 GO:0016787(InterPro)
Cco01g0710 333 PANTHER TARTRATE-RESISTANT ACID PHOSPHATASE TYPE 5 29 326 IPR051558 GO:0003993(PANTHER)|GO:0008198(PANTHER)|GO:0008199(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0710 K14379 - - csv:101221226 600.127
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g545 . . . . Bpe13g00994 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01958 . . . . . . . . . . . . Cmo15g00921 . Cma15g00883 . Car15g00830 Cpe13g00432 . Bhi12g00974 . . . . . Lcy10g1587 Cla01g00660 Cam01g0690 Cec01g0682 Cco01g0710 Clacu01g0679 Cmu01g0653 Cre09g1853 Lsi09g00714 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004118 1 3 1 2 1 1 1 1 1 0 1 1 1 1 1 1 1 3 1 1 1 1 2 2 3 2 1 5 1 1 43