Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco01g0715 | ATGTTGAAACCTTCAACTTCTTCTTCTGGTGGTCTTCCTCTTCCTCCTCCTCTTCCTCCTCCCAATTCTGACCATGCCATCACCAGCAAAAGAAAAAGAAGACCCGCAGGAACTCCAGATCCGGATGCGGAAGTGGTTTCTTTATCCCCAAAAACGCTTCTTGAATCGGATCGGTATGTTTGTGAGATATGCAACCAAGGGTTCCAAAGGGATCAGAATCTTCAAATGCACCGGCGCCGCCACAAAGTGCCTTGGAAGTTACTAAAGAGAGCGGAGACGGCGGAGAGTGTGAAGAAAAAGGTGTTTGTTTGTCCGGAGCCGACGTGTCTTCACCATGACCCTTGCCATGCTCTTGGTGATCTCGTCGGTATAAAAAAGCACTTCCGGAGAAAGCATAGCAACCAAAAGCAGTGGGTTTGTGACAAGTGCTCTAAGGCTTATGCTGTTCATTCTGATTTCAAAGCTCACCTCAAAACTTGTGGCACTCGTGGCCACTCTTGTGATTGTGGTCGTGTCTTTTCCAGAGTGGAGAGCTTTATAGAGCACCAAGATACTTGCAATATCCGCCAGATGAGGTCCGATCAATTGCAACCAGTGGTGCCGCCGTTACCACCACCGCTGTTATTGCAACCCTACTCACGATCAGTTTCTTACACCGGCGCTTCCACCAGCAACGATCATAGCTTTCAAATGGCTACTCCATTACGAGGGTTTCCAATCTTATCATCAAACTCGGATCGAAACATCAACATTAATTTACCCGATCACCACGATCTCGAACTTCATCTCTCTTCTCCGAGCTCAGCCTTTCTAAAGCTCTCAATTGGGTCCAACAAGGAGCCGAATGACGAGCGTCAACTCGAGCTGGCGATAGCAGAGAAGGCGTACGCAGACGAAGCAAGACGAGAGGCGAAACGACAGATCGAAATTGCCGAAGTCGAGTTTGCAAATGCCAAAATGATACGACAGCAAGCTCAAGCGGAGTTGGAGAAAGCAAGGATCTTGAAGGAAGAAGCTAGCCGGAAAATGAGCTCCACTATTGTGGAAATCACTTGCCAAACTTGCCGGTTGCACTTTCACATGAGTTCGGCCGCTCCTGAAGAGACCTCACTCGCCATCAGCTACATGTCGTCTGCTACGACAGAAGGTGACGGAGAATGA | 1161 | 48.66 | MLKPSTSSSGGLPLPPPLPPPNSDHAITSKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRAETAESVKKKVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNQKQWVCDKCSKAYAVHSDFKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDTCNIRQMRSDQLQPVVPPLPPPLLLQPYSRSVSYTGASTSNDHSFQMATPLRGFPILSSNSDRNININLPDHHDLELHLSSPSSAFLKLSIGSNKEPNDERQLELAIAEKAYADEARREAKRQIEIAEVEFANAKMIRQQAQAELEKARILKEEASRKMSSTIVEITCQTCRLHFHMSSAAPEETSLAISYMSSATTEGDGE | 386 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 7584910 | 7586666 | + | CcPI632755_01g007150.1 | Cco01g0715 | 169577 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco01g0715 | 386 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 59 | 81 | IPR013087 | - | |
Cco01g0715 | 386 | SMART | c2h2final6 | 102 | 132 | IPR013087 | - | |
Cco01g0715 | 386 | SMART | c2h2final6 | 138 | 165 | IPR013087 | - | |
Cco01g0715 | 386 | SMART | c2h2final6 | 59 | 81 | IPR013087 | - | |
Cco01g0715 | 386 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 23 | 340 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Cco01g0715 | 386 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 165 | 187 | - | - | |
Cco01g0715 | 386 | Gene3D | Classic Zinc Finger | 37 | 105 | - | - | |
Cco01g0715 | 386 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 61 | 81 | IPR013087 | - | |
Cco01g0715 | 386 | MobiDBLite | consensus disorder prediction | 1 | 45 | - | - | |
Cco01g0715 | 386 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 98 | 132 | - | - | |
Cco01g0715 | 386 | Gene3D | Classic Zinc Finger | 123 | 198 | - | - | |
Cco01g0715 | 386 | FunFam | protein indeterminate-domain 12-like | 38 | 108 | - | - | |
Cco01g0715 | 386 | SUPERFAMILY | beta-beta-alpha zinc fingers | 58 | 158 | IPR036236 | - | |
Cco01g0715 | 386 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 137 | 161 | - | - | |
Cco01g0715 | 386 | Coils | Coil | 301 | 342 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco01g0715 | Cco-Chr1:7584910 | Cco01g1629 | Cco-Chr1:28999151 | 3.00E-97 | dispersed | |
Cco01g0715 | Cco-Chr1:7584910 | Cco04g1699 | Cco-Chr4:32146844 | 7.60E-61 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58592 | None | None | None | None | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco01g0715 | K25871 | - | csv:101210468 | 675.241 |