Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0715 ATGTTGAAACCTTCAACTTCTTCTTCTGGTGGTCTTCCTCTTCCTCCTCCTCTTCCTCCTCCCAATTCTGACCATGCCATCACCAGCAAAAGAAAAAGAAGACCCGCAGGAACTCCAGATCCGGATGCGGAAGTGGTTTCTTTATCCCCAAAAACGCTTCTTGAATCGGATCGGTATGTTTGTGAGATATGCAACCAAGGGTTCCAAAGGGATCAGAATCTTCAAATGCACCGGCGCCGCCACAAAGTGCCTTGGAAGTTACTAAAGAGAGCGGAGACGGCGGAGAGTGTGAAGAAAAAGGTGTTTGTTTGTCCGGAGCCGACGTGTCTTCACCATGACCCTTGCCATGCTCTTGGTGATCTCGTCGGTATAAAAAAGCACTTCCGGAGAAAGCATAGCAACCAAAAGCAGTGGGTTTGTGACAAGTGCTCTAAGGCTTATGCTGTTCATTCTGATTTCAAAGCTCACCTCAAAACTTGTGGCACTCGTGGCCACTCTTGTGATTGTGGTCGTGTCTTTTCCAGAGTGGAGAGCTTTATAGAGCACCAAGATACTTGCAATATCCGCCAGATGAGGTCCGATCAATTGCAACCAGTGGTGCCGCCGTTACCACCACCGCTGTTATTGCAACCCTACTCACGATCAGTTTCTTACACCGGCGCTTCCACCAGCAACGATCATAGCTTTCAAATGGCTACTCCATTACGAGGGTTTCCAATCTTATCATCAAACTCGGATCGAAACATCAACATTAATTTACCCGATCACCACGATCTCGAACTTCATCTCTCTTCTCCGAGCTCAGCCTTTCTAAAGCTCTCAATTGGGTCCAACAAGGAGCCGAATGACGAGCGTCAACTCGAGCTGGCGATAGCAGAGAAGGCGTACGCAGACGAAGCAAGACGAGAGGCGAAACGACAGATCGAAATTGCCGAAGTCGAGTTTGCAAATGCCAAAATGATACGACAGCAAGCTCAAGCGGAGTTGGAGAAAGCAAGGATCTTGAAGGAAGAAGCTAGCCGGAAAATGAGCTCCACTATTGTGGAAATCACTTGCCAAACTTGCCGGTTGCACTTTCACATGAGTTCGGCCGCTCCTGAAGAGACCTCACTCGCCATCAGCTACATGTCGTCTGCTACGACAGAAGGTGACGGAGAATGA 1161 48.66 MLKPSTSSSGGLPLPPPLPPPNSDHAITSKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRAETAESVKKKVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNQKQWVCDKCSKAYAVHSDFKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDTCNIRQMRSDQLQPVVPPLPPPLLLQPYSRSVSYTGASTSNDHSFQMATPLRGFPILSSNSDRNININLPDHHDLELHLSSPSSAFLKLSIGSNKEPNDERQLELAIAEKAYADEARREAKRQIEIAEVEFANAKMIRQQAQAELEKARILKEEASRKMSSTIVEITCQTCRLHFHMSSAAPEETSLAISYMSSATTEGDGE 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7584910 7586666 + CcPI632755_01g007150.1 Cco01g0715 169577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0715 386 ProSiteProfiles Zinc finger C2H2 type domain profile. 59 81 IPR013087 -
Cco01g0715 386 SMART c2h2final6 102 132 IPR013087 -
Cco01g0715 386 SMART c2h2final6 138 165 IPR013087 -
Cco01g0715 386 SMART c2h2final6 59 81 IPR013087 -
Cco01g0715 386 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 23 340 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cco01g0715 386 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 165 187 - -
Cco01g0715 386 Gene3D Classic Zinc Finger 37 105 - -
Cco01g0715 386 ProSitePatterns Zinc finger C2H2 type domain signature. 61 81 IPR013087 -
Cco01g0715 386 MobiDBLite consensus disorder prediction 1 45 - -
Cco01g0715 386 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 98 132 - -
Cco01g0715 386 Gene3D Classic Zinc Finger 123 198 - -
Cco01g0715 386 FunFam protein indeterminate-domain 12-like 38 108 - -
Cco01g0715 386 SUPERFAMILY beta-beta-alpha zinc fingers 58 158 IPR036236 -
Cco01g0715 386 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 137 161 - -
Cco01g0715 386 Coils Coil 301 342 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0715 Cco-Chr1:7584910 Cco01g1629 Cco-Chr1:28999151 3.00E-97 dispersed
Cco01g0715 Cco-Chr1:7584910 Cco04g1699 Cco-Chr4:32146844 7.60E-61 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58592 None None None None Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0715 K25871 - csv:101210468 675.241