Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0727 ATGTCCAGAATCCTACACCAAAGTTTACAATCCCCCAAAACTCCATGCCTAAGGAGGCTGCTCTTCAAATCCAAGGCTCAATTTAGCTCATCATCGACTCTTCAACGCTCCCTTGAGATGGTGGATGAGAATACCATTTTGGGGTCGACTTATAATGGTGAATTTGAAGACGTGAAGCTGTTGAATGATTTGTTGGTGGAGAAGAATAAGGAAACTGGATGGGATACTCCCATTCATGTGGATGGAGCCAGCGGTGGGTTCATAGCGCCGTTTCTGTATCCAGAGCTTGAATGGGACTTCAGGCTAATTCCTTTGGTGACGAGCATAAATGTTAGTGGGGGTTGTTTACGCTGGAATTGGGAGGTTTACGATCGTGTCAAAGGATATAAAGGAGTGCCGGTGGTGGCATTTTGCCTGAAAGACCGGAGCCGCCGCGACGAGTTTGAGGTGTCAGAGATGTTGTGGCGGTTTAGGTGGATCGTGCCGGCTTATCCAATGCCGGAGGGTGCCAAGCAAATGTCTGTTCTTTGA 531 48.02 MSRILHQSLQSPKTPCLRRLLFKSKAQFSSSSTLQRSLEMVDENTILGSTYNGEFEDVKLLNDLLVEKNKETGWDTPIHVDGASGGFIAPFLYPELEWDFRLIPLVTSINVSGGCLRWNWEVYDRVKGYKGVPVVAFCLKDRSRRDEFEVSEMLWRFRWIVPAYPMPEGAKQMSVL 176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7745288 7747466 + CcPI632755_01g007270.1 Cco01g0727 169589

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0727 176 Gene3D - 121 176 - -
Cco01g0727 176 SUPERFAMILY PLP-dependent transferases 39 168 IPR015424 -
Cco01g0727 176 Gene3D - 32 116 IPR015421 -
Cco01g0727 176 Pfam Pyridoxal-dependent decarboxylase conserved domain 30 113 IPR002129 GO:0016830(InterPro)|GO:0019752(InterPro)|GO:0030170(InterPro)
Cco01g0727 176 PANTHER GLUTAMATE DECARBOXYLASE 122 176 IPR010107 GO:0004351(InterPro)|GO:0004351(PANTHER)|GO:0005829(PANTHER)|GO:0006536(InterPro)|GO:0006538(PANTHER)|GO:0030170(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0727 K01580 - - csv:101208026 140.584
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0727 Cco-Chr1:7745288 Cco01g0901 Cco-Chr1:9995233 5.60E-43 dispersed
Cco01g0726 Cco-Chr1:7727894 Cco01g0727 Cco-Chr1:7745288 1.50E-48 tandem
Cco01g0727 Cco-Chr1:7745288 Cco01g0728 Cco-Chr1:7752236 8.00E-50 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g572 . . . . . . . . . . . . . . . . Cpe01g01871 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo04g02255 Cmo15g00908 Cma04g02158 Cma15g00874 Car04g02093 Car15g00822 . . Bhi12g00996 . . . . . Lcy10g1573 Cla01g00674 Cam01g0705 Cec01g0699 Cco01g0727 Clacu01g0693 Cmu01g0668 . Lsi09g00732 Csa05g01306 Chy09g00459 Cme09g01267
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0020112 0 0 0 0 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 4