Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0728 ATGGTTTTGTCCAAAACTTTCTCTGAATCCGATGTTTCCATACATTCCACATTTGCCTCTCGCTACGTTCGGGACTCTGCTCCAAGGTTCACCATGCCCGACAACTCCATGCCCAAGGAGGCCGCCTTCCAAATCATCAACGACGAGCTCATGCTCGACGGCAACCCAAGGCTGAATCTAGCCTCCTTCGTCACTACTTGGATGGAGCCCGAATGCGATAAGCTCATCATGGACTCTGTCAACAAGAACTACGTGGACATGGACGAGTACCCTGTCACCACCGAGCTTCAGAACCGCTGCGTCAACATGATTGCCCATCTCTTCAACGCCCCCTTGGGAGACTCCGACACCGCCGTCGGAGTTGGGACGGTGGGGTCGTCGGAGGCCATCATGCTGGCGGGGCTTGCCTTCAAGAGGAAGTGGCAGAACAGGCGGAAAGCAGAGGGGAAGGCTTATGAGAAGCCCAATATTGTGACGGGTGCCAATGTGCAAGTTTGTTGGGAGAAATTTGCGAGATACTTTGAAGTTGAGCTGAAGGAAGTTAAAGTGAGAGAAGGGTATTACGTGATGGACCCTGTTCAAGCCGTTGAGATGGTGGATGAGAATACCATCTGCGTTGCAGCCATTTTGGGGTCAACTTACAATGGTGAATTCGAAGATGTGAAGCTGTTGAATGATTTGTTGGTGGAGAAGAATAAGGAAACTGGATGGGATACTCCCATTCACGTGGATGCGGCCAGCGGTGGGTTCATAGCGCCGTTTCTGTATCCAGAGCTTGAATGGGACTTCAGGCTTCCTCTGGTGAAGAGCATCAATGTGAGCGGCCATAAGTATGGGCTTGTCTACGCTGGAATTGGTTGGGTCATTTGGAGAACCAAACAAGATCTGCCCCAAGAACTCATTTTCCATATCAATTACCTTGGAGCCGACCAACCCACCTTCACTCTCAACTTCTCCAAAGGGTCAAGCCAAATCATTGCGCAGTATTACCAACTAATCCGATTGGGTTTCGAGGGATATCGGAATGTTATGCAGAATTGTCACGACAATGCAATGGTGCTGAAGGAAGGGCTTGAAAACACAGGGAGGTTCACCATAGTTTCAAAGGACATGGGAGTGCCGGTGGTGGCGTTCTCCCTCAAAGACCGAAGCCGACACGACGAGTTTGAGGTATCAGAGATGTTGCGGCGGTTTGGGTGGATCGTGCCGGCGTATCCAATGCCAGAAGGGGCGAAACACGTATCAGTTCTTCGTGTGGTGATAAGAGAAGATTTTTCTCGCACGCTTGCGGAGCGGCTTGTGCTTGATATCGTAAAGGTTTTGGCTGAGTTAGATACTCTTCCACCAAAGAATGGTGGAAATGAAACGGGTGGAAAGAAGAGGGTAGAGGAAACGGAGAGGGAAATAGCGACTTATTGGAGGAATATAACGAAGGCTAGGAAAATCAAGCTTGCTGCTAATCAAGATGGTCCTTCAGTTACCGTCATTGCCAAATAA 1497 49.77 MVLSKTFSESDVSIHSTFASRYVRDSAPRFTMPDNSMPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMDSVNKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGDSDTAVGVGTVGSSEAIMLAGLAFKRKWQNRRKAEGKAYEKPNIVTGANVQVCWEKFARYFEVELKEVKVREGYYVMDPVQAVEMVDENTICVAAILGSTYNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRTKQDLPQELIFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGFEGYRNVMQNCHDNAMVLKEGLENTGRFTIVSKDMGVPVVAFSLKDRSRHDEFEVSEMLRRFGWIVPAYPMPEGAKHVSVLRVVIREDFSRTLAERLVLDIVKVLAELDTLPPKNGGNETGGKKRVEETEREIATYWRNITKARKIKLAANQDGPSVTVIAK 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7752236 7753802 + CcPI632755_01g007280.1 Cco01g0728 169590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0728 498 FunFam Glutamate decarboxylase 66 360 - -
Cco01g0728 498 CDD DOPA_deC_like 59 439 - -
Cco01g0728 498 FunFam Glutamate decarboxylase 1 65 - -
Cco01g0728 498 FunFam Glutamate decarboxylase 361 448 - -
Cco01g0728 498 NCBIfam glutamate decarboxylase 16 444 IPR010107 GO:0004351(InterPro)|GO:0006536(InterPro)|GO:0030170(InterPro)
Cco01g0728 498 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 381 IPR002129 GO:0016830(InterPro)|GO:0019752(InterPro)|GO:0030170(InterPro)
Cco01g0728 498 Gene3D - 1 65 - -
Cco01g0728 498 Gene3D - 361 448 - -
Cco01g0728 498 SUPERFAMILY PLP-dependent transferases 16 444 IPR015424 -
Cco01g0728 498 Gene3D - 66 360 IPR015421 -
Cco01g0728 498 PANTHER GLUTAMATE DECARBOXYLASE 1 481 IPR010107 GO:0004351(InterPro)|GO:0004351(PANTHER)|GO:0005829(PANTHER)|GO:0006536(InterPro)|GO:0006538(PANTHER)|GO:0030170(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0726 Cco-Chr1:7727894 Cco01g0728 Cco-Chr1:7752236 4.20E-285 dispersed
Cco01g0728 Cco-Chr1:7752236 Cco01g1862 Cco-Chr1:31156884 1.50E-218 dispersed
Cco01g0727 Cco-Chr1:7745288 Cco01g0728 Cco-Chr1:7752236 8.00E-50 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0728 K01580 - csv:101208026 964.14