Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0732 ATGGTGCCGCTCCTAGTGGAACGTCCCGTAACCAATGGCTTTCACCCATTGCTCCGTTCCTCCTTATGCCCTTGCCCTTGTTCTTCAATCCGTAGCCTCTTCTTCCACCGCAGGAAGATGTTTCTCAGGTTGGTTGAACATCGGAATTCCTACCCATTTCTGCATACTACAGCGAACAGTTCTTCCCCAAATGCTACTGGAAGGAGCAATAACGAGAAGGATTTCTGGGATGATGATGAGTTCGTGGAGGTGATTGGCACTGGCAGTAGAAAGGAAGCCGTACTTGATTTTTGTCTTGAGTCGGCCCTCAGGATTTCATCGCTGCGATTTTGGCAAATTGTAAGGCATGATTCTCTAAAAGTGCAACTACTTCAGAGATTCATTGAAAAAGATTACACCCCAAGGATGATTGACGTTCCGCTGTCACTACAATCATGTTCGAAGGCTGTTATACTTGTGGTTAGTGCTGGATATGGCTTCGATTACTCTGCAGCTGTTGATATCCTTAGAACCATAAGATCTGCAAATGGATTTACTGTTACAATTGTCTTAAAGCCTTTTAGCTTTGAAGGGAAAAGGCGCCAGGATGAGGTTAAACATTTGGTAGGAAGGCTAAAGGAACATACGAGCTTCTTAATTGATATTGACACTGATAGACTACTTGAAAAGGACTTGGTGACTCTAGACGAGGCTGTGAGATCTGCAAATAATGCTGTCTTGTTGGCTATAAATTCGATGTCCATTGTCAAGTCTGAGATGTTAATAAAGTTCATAGATGAACCTCAAAATGATGTGAAAGAGCTTGGTGTTATAGACGTCATGGAAATTTTGGAGAACCTTAAAGAAGGAAAGATCGGATTTGGAGCTGGTCACAACTTCCGAACTTCAATCTTAAAGTCAATTTATGACTGCCCTTTCCTCAGTGTGCATTTAAAGGATTTGAAAGGTGTGGTTGTATGCATCGTGGCAAGCTCAAGTATTATCGATGACAATGATAAAAGCACCCTGTTGAAAACTTTTCGTGAAGTTACCGCATATACAGGAAAAGTTATATTATCCATAATTCAGGATCTAAATCTGGAGCCCAACTTTCTCATGACAACCGTTCTGCTTGTTGGTTCGACAAAGCAGCAATCTTCCAAAAGTAGTAGCATTTTATCTAGATTGGCCCAGCGTTTCCCTTTGGTTTTTAAGCTTTTATGGAAACCTGAAGAACCATTGGAGGAACCTGAAGAAAGGGATATGCTTGAAGATGCAAGTCCTTTCAATGTAAGACAGTCACCAGACTCTGATGTGGACATAACGAAAATTGCTTCAGAGGGCATGGATAAAGATTTTTATCATGGCACAGAACCTGAAAATTGCCCAACAACAGCCAATTGCAGTGATTTAGTCAGTTCAAGTGATTCTGAACAACTTGAGGCTGAACTGTTAGAAACTGATGTGAATTCTTTGCCTTTTAGCAATGGAATTATTAGAGGAGCTTCTTTTCGCAGAGACCCCCTCCACAGATGGAATTTGGGTCCAGGACATCAGATCGCACAGCAGTGGGCCAGAGAAAGAGCTGCTGATGCTGAGTTGGCTTCTGCACTTGACAATATAAGCATATTTGACCTCCCAGTCGGAGTGAGACCTTCAGAAGAGCTCCAAGATAAAGCCTTTCCAAATCCAGAGATGAAATATGAGAAGAAATCTAAAGCTTCAATCAGTAATTCTAGATTTTCTTCTCAGAATTCATTGACCGATGCAAGTTTAGAAGTGATTAAGGAATTTTACGATACCTCTTCTGCATTTTTAAAAGGGAAATCTTCTGACATTCCTAAGAAGCAAGGACTTCTGTCTGTTCGTGCAGCATCTATGCTGGAAGCAGAGCGAGATTCACCTAAAAAGTGGAATCCTGTGATGGAGCTGCAGTACAGAGGTGGCCTTTACAGGGGACGGTGCCAAGGAGGGCTCCCCGAAGGAAAGGGCCGTCTAGTTCTTCAAGATGGGAGCATATATGATGGTATGTGGCGATATGGTATGAGATCAGGTCAAGGAACAGTTTACTTCAGCAATGGAGATATGTTTCAGGGATCATGGAGGGATGATGTCATGCATGGAAAGGGCTGGTTTTATTTTCACACAGGAGATCGGTGGTTTGCAAACTTCTGGAAGGGAAAGGCTTATGGAGAAGGTCGCTTCTACTCAAAGTCAGGTGATGTTATATTTGGTCATTTCCAAGATGGATGGCGTCATGGCGACTTTCTTTGCATTAATGTTGACGGTTCAAGATATATAGAAGTTTGGAATGAAGGTTATCTCATGGGACGTGAGAATTTGGACTCCGGTTCTGATACTGCATAA 2346 42.37 MVPLLVERPVTNGFHPLLRSSLCPCPCSSIRSLFFHRRKMFLRLVEHRNSYPFLHTTANSSSPNATGRSNNEKDFWDDDEFVEVIGTGSRKEAVLDFCLESALRISSLRFWQIVRHDSLKVQLLQRFIEKDYTPRMIDVPLSLQSCSKAVILVVSAGYGFDYSAAVDILRTIRSANGFTVTIVLKPFSFEGKRRQDEVKHLVGRLKEHTSFLIDIDTDRLLEKDLVTLDEAVRSANNAVLLAINSMSIVKSEMLIKFIDEPQNDVKELGVIDVMEILENLKEGKIGFGAGHNFRTSILKSIYDCPFLSVHLKDLKGVVVCIVASSSIIDDNDKSTLLKTFREVTAYTGKVILSIIQDLNLEPNFLMTTVLLVGSTKQQSSKSSSILSRLAQRFPLVFKLLWKPEEPLEEPEERDMLEDASPFNVRQSPDSDVDITKIASEGMDKDFYHGTEPENCPTTANCSDLVSSSDSEQLEAELLETDVNSLPFSNGIIRGASFRRDPLHRWNLGPGHQIAQQWARERAADAELASALDNISIFDLPVGVRPSEELQDKAFPNPEMKYEKKSKASISNSRFSSQNSLTDASLEVIKEFYDTSSAFLKGKSSDIPKKQGLLSVRAASMLEAERDSPKKWNPVMELQYRGGLYRGRCQGGLPEGKGRLVLQDGSIYDGMWRYGMRSGQGTVYFSNGDMFQGSWRDDVMHGKGWFYFHTGDRWFANFWKGKAYGEGRFYSKSGDVIFGHFQDGWRHGDFLCINVDGSRYIEVWNEGYLMGRENLDSGSDTA 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7776451 7792474 - CcPI632755_01g007320.1 Cco01g0732 169594

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0732 781 SUPERFAMILY Tubulin nucleotide-binding domain-like 84 247 IPR036525 -
Cco01g0732 781 Gene3D Tubulin/FtsZ, GTPase domain 121 373 IPR036525 -
Cco01g0732 781 PRINTS Cell division protein FtsZ signature 271 292 IPR003008 GO:0005525(InterPro)
Cco01g0732 781 PRINTS Cell division protein FtsZ signature 177 198 IPR003008 GO:0005525(InterPro)
Cco01g0732 781 PANTHER RADIAL SPOKE HEAD 1 HOMOLOG 239 766 - GO:0005829(PANTHER)|GO:0009707(PANTHER)|GO:0010020(PANTHER)|GO:0035452(PANTHER)
Cco01g0732 781 SMART morn 665 686 IPR003409 -
Cco01g0732 781 SMART morn 688 709 IPR003409 -
Cco01g0732 781 SMART morn 642 663 IPR003409 -
Cco01g0732 781 Pfam MORN repeat 690 712 IPR003409 -
Cco01g0732 781 Pfam MORN repeat 649 665 IPR003409 -
Cco01g0732 781 Pfam MORN repeat 667 689 IPR003409 -
Cco01g0732 781 Gene3D - 646 701 - -
Cco01g0732 781 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 641 766 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0732 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1110 . . Bda01g01766 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe02g01940 . . . . Cmo15g00905 . Cma15g00870 . Car15g00817 . . Bhi12g01003 . . . . . Lcy10g1569 Cla01g00679 Cam01g0711 Cec01g0703 Cco01g0732 Clacu01g0697 Cmu01g0672 Cre09g1833 Lsi09g00736 Csa05g01314 Chy09g00454 Cme09g01260
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009880 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 0 1 2 1 2 1 1 1 1 32