Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0740 GACCTCTCTCTTCCCTTGTTTGGCTCTTTTGATTGGTTGCCTAAGAGAATGAGCGTCTTCAACATGAGGGCTAAGTGGAAGAAGAAGAGAATGAGGAGATTAAAGAGGAAGCGCCGGAAGATGAGGCAGAGCTTTTCATCCGTTGGACCTTTTGGTCAGAAAAATACGAAGGTCCTTCAACTCTTTATAGAGGGATTATGGGGCTCCTTTTGGCTACGGTCATATTCTTCTTTAGAGTTTGGTTCCCATTTCAGGAGCTGCAGTGTAGGGAACAAAACTCGGTACGGATGCCTAAGAGCAGAGCTTAGTCTCAAAATCTCAAGAGATCTGGAAGGAGAAAGCTGCCATTTTGTTGTAGCCTTGCAGAATGAAGCCCAGAAAGGTCTCGAAACTGCTTGTACTGATTCAGTCATCTCTGAAGCTCAGCTACGGTCTCAGCCTCGGGCAATCAGCTTCACTCCCAATGGTTTTGTTTCTCCGGTTCATGTTTCTACTTCTTCCACCGATATGACTACGAGACTTCCAGTTCAGCATTACGATCTCAGAACGCCCAATTCCTTCATTGGTAGCGCTCTTCATGATCTCAACACTTCACACGGAAGCCCTTCTGATATTGAAGCCATCAGCGACGTTGACCGCGATGCTGTTACCGATGATCGCTTGGACGATGACCAAGATTCCAGTGCAGTTGACTGTATACATGAATCTTATAGAAGTTCATTACCTATTCACACTGTGGGAGTAGAAGAAGATCGCTCAAGTCTTGAAAATAGTGGGTCTTCCAGGTTGTCTTATGACTCTTTAACTGTAGAGGATATTTCACCTATTGAAGCAGCACGTGCAAGATTTCTGCAGATCATTGTGGATCATTTTATTGATGATCATGTACTCGAAGTGACTGAGACTGACAATGATTATATCTCTCAGTCTGGACAGGATAAATTGACAAAGAGGAAGACGAAGGAAGTTCAGTATGAAGGGGACCCAAAATTTGTCTTACCCTTGATGTATGTTGCAAATATGTATGAAACACTTGTTAATGATGCAAACATCAGGCTTGCTTCCTTGAGTGGCATCCGTGATAAAACTATTGGGGTAGCCCTTGAAGCAGCTGGAGGTTTGTACAGAAAGCTGGCTCAGAAATTCCCCAAAAAAGGCCCTTGCACATATAAGAGAAGAGAACTCGCAACTTCTCTTGAGACAAGGACTAGGTTTCCAGAACTAGTAGTTCAAGAAGAGAAGCGGGTCCGTTTTGTGGTTGTTAATGGTTTAGACATTGTTGAAAAACCCAATGGAATGCCGATTGAAGATGCTGAATGGTTTAGACGATTAACAGGTCGCAATGAGGTAGCTGTATCTGCTCAGGACTACAAGTTCTATTCACCAAGGCATAAATATAGGCGAGTTGCAGCAAATTCTGTGTCCAGCATTTCCAGTTTGAATACATTTTCCAGCGGTGACAATTCTTCTATTCTGACTAGTGGTCAAGCATTCCGCTCTCCGGGTGAACAACAAGCACCCTGCAAACATCATATCCAACAACTGCCTCATCAGCCTCAATTTCAGTCTATCCACCAGAATCATCATCAGTCCATGCACCAAAGTCAACATACTCCCCACTTTGCTAACAATCATCAATGTGGTCAACCTTCCCAGTTACAGGATATTTCTCATACTCATCATTCTCCAACAATGTCACAACACATAGCTTGCTTACAACCTCTTTCAGGTGGTCATGTTGGTGGGCGTTTGCATCATGGGCTGCCATCCAGTCCTGCCAAGTTCTGTGATGAATGTGGAGCTCCATATTTAAGAGAAACCTCTAAGTTCTGCTCAGAATGCGGTGTCAAGAGGTTCTTGCCTGTGATCAAAGCAAGATATGATTATGGAGTGTTGATGTTCATAGTGACTTTCACTATAGTTTCGATTTCGGGTTATCAAGTCGATAACTTCTTTACGTTGGCTTATCAGAGACTGTCTTCTGTTCTTGCTGGTGGAGCTATCTGCATTATCATCTGCATGGTTGTTTGCCCTGTTTGGGCTGGTGAAACTCTTCATGATGCTGTTACTTCCAATATAGACAATGAACTAATAAAGGTTAAAACTTTGCAGGATTTGGTGAGGAATATTTTCATTGTTCATGAAGATGAAGAAGAAAAGCATGTTACTGATACTAAAAAGGACAAATCATTCCTTCAAGAATACAAAGTTGTCCTCGATTCTAGTACCACAGAAGAATCCTTGGCAAACTTTGGAAGATGGGAACCAAAACATGGAAAGTTTGGCTTTCATCACCCATGGAAACACTACTTGAAAATTGGATCCCTTGCTCGACAATGTGCCTATGGGATTGAAGCTCTCAATGGCTATCTTTCCCCTGAAAATAATTGTTATTGCAATTTGGAAGAACAACTGAAGTTCTATGCAAGAACTTAA 2436 42.49 DLSLPLFGSFDWLPKRMSVFNMRAKWKKKRMRRLKRKRRKMRQSFSSVGPFGQKNTKVLQLFIEGLWGSFWLRSYSSLEFGSHFRSCSVGNKTRYGCLRAELSLKISRDLEGESCHFVVALQNEAQKGLETACTDSVISEAQLRSQPRAISFTPNGFVSPVHVSTSSTDMTTRLPVQHYDLRTPNSFIGSALHDLNTSHGSPSDIEAISDVDRDAVTDDRLDDDQDSSAVDCIHESYRSSLPIHTVGVEEDRSSLENSGSSRLSYDSLTVEDISPIEAARARFLQIIVDHFIDDHVLEVTETDNDYISQSGQDKLTKRKTKEVQYEGDPKFVLPLMYVANMYETLVNDANIRLASLSGIRDKTIGVALEAAGGLYRKLAQKFPKKGPCTYKRRELATSLETRTRFPELVVQEEKRVRFVVVNGLDIVEKPNGMPIEDAEWFRRLTGRNEVAVSAQDYKFYSPRHKYRRVAANSVSSISSLNTFSSGDNSSILTSGQAFRSPGEQQAPCKHHIQQLPHQPQFQSIHQNHHQSMHQSQHTPHFANNHQCGQPSQLQDISHTHHSPTMSQHIACLQPLSGGHVGGRLHHGLPSSPAKFCDECGAPYLRETSKFCSECGVKRFLPVIKARYDYGVLMFIVTFTIVSISGYQVDNFFTLAYQRLSSVLAGGAICIIICMVVCPVWAGETLHDAVTSNIDNELIKVKTLQDLVRNIFIVHEDEEEKHVTDTKKDKSFLQEYKVVLDSSTTEESLANFGRWEPKHGKFGFHHPWKHYLKIGSLARQCAYGIEALNGYLSPENNCYCNLEEQLKFYART 811
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7825455 7839625 - CcPI632755_01g007400.1 Cco01g0740 169602

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0740 811 MobiDBLite consensus disorder prediction 537 559 - -
Cco01g0740 811 Pfam Aluminium activated malate transporter 617 805 IPR020966 GO:0015743(InterPro)
Cco01g0740 811 PANTHER ALUMINUM-ACTIVATED MALATE TRANSPORTER 10 618 795 - GO:0009705(PANTHER)
Cco01g0740 811 Pfam Ribosomal protein L41 22 43 IPR007836 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0740 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0740 Cco-Chr1:7825455 Cco04g1260 Cco-Chr4:27956571 3.60E-52 dispersed
Cco01g0740 Cco-Chr1:7825455 Cco10g1819 Cco-Chr10:31858667 2.60E-58 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1081 . . Bda01g01780 . . . . . . . . . . . . . Cpe01g01879 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe02g01958 . . . Cmo04g02266 . Cma04g02167 . Car04g02098 . . . Bhi12g01010 . . . . . . Cla01g00686 Cam01g0717 Cec01g0710 Cco01g0740 Clacu01g0704 Cmu01g0676 Cre09g1828 Lsi09g00745 Csa05g01320 Chy09g00449 Cme09g01254
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011867 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 0 1 1 1 30