Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco01g0767 | ATGAATGGGAAGGATGAATTTGAAGTTGAGAATAGGACGAGTGATCCTATGAGTATCTCCTCCGGCTGGCAATTTGCTGCTGCTGCTAATCTCACTAATGAGTCTGTTGGATTCGTTTCTACTGGGAATCCTTCTGTTGTTAGCAATGGGGATCTAGGTGTTTCTTCTTGTCCTTCGACTTCAATGTCTAACTTATTTACTTCAACGCTTTTGAACCATCATACCGAATCGCAAAACTCGGGATTCTGCACCTCTTTTAATGAACAAAACAGCATAGTTGCTTCTAATACGACTGTAGTTGATGGAGAGGGTCTGAATTCTTTGAGATCTAATGGTGATACTAGAACGCTGGGTATGGATTGGAATCAACAAAATCCATGGATGAAAGGAATTTTCTCAGGAAATGTTCCTGGAATATTTCCAGCTAACTTGTCTCAACTTCCAGCTGATTCGGCATTCATCGAACGTGCAGCAAGGTTCTCCTGCTTCAATAGCGGAGTTTTTGGGGCTCCGCCTACTGGTCCATTTGGCATTTCAGACTCTATAGGCATTCATTCTGGGAGTGGATTTGGAAGGCAAGAAGTTATTTCAAGAAATGGAGCCTCCAAAGATGTTTCTTTGCCCATGGAGCTTGAAGCTAAAGAAAAGAGTCCATCTAAGAATGAGAAAGATAGCGAAATGTCCCAAGACAGGACTAAACAGGGTTGTGTTGGTGAGTCTGGTAATGATTCTGATGAGGCGGGGTTTAGTGGTGGTCAAGAAGAGCTGGGCACGTTGGGAGGTGCCATCACAGAACCATCTACTGAAGGACTGTGCTTCAAGAAAAGGAAAAGGGGTGAGCAGAATGTGGGACTTGGACAAGTTAAAGAAGCTCCACAACAAATCAATGAAACTGCAAAGAATGGAGCATTCAGTCAGCAGAAGGGAGATCAAAACCCAAGTTCTACTACTAATAAGCCCGCTGGGAAGCAAGGAAAACAAGATTCTCAACCATCAGATGCTCCCAAAGAAGAATACATTCACGTTAGAGCTCGAAGAGGACAGGCAACAAACAGCCATAGTCTTGCTGAAAGGGTTAGAAGAGAAAAGATAAGTGAAAGAATGAGGCTCCTTCAGGACCTTGTGCCTGGGTGTAGTAAGGTCACTGGCAAAGCTGTAATGCTCGATGAAATCATTAACTATGTACAGTCACTGCAACGGCAAGTTGAGTTTTTGTCAATGAAACTTGCAACGGTTAATCCCAGGCTGGATTTTAACATCGAAGAGCTCCTCGCAAAAGAAATCATTCAATCAAAGGCTGGTCCATCTTTGTTCGGTTTTCCTCCTGATCTGCCTGTGCCTTACCTCCCGCAGCATCCGTCTCACCATGGACTTATTCCGCCTTGTCTTCCTAACATGGGGAGTTCTCCGGACCTGCTACGAAGAACAATTAACTCTCAGCTGACATCACTTGTTGGTGGATTCAAGGAGCCTGTTCAGCTACCAAACCGATGGGAGAATGAACTCCACAATGTTGTTCCGATGAACTTTGATGTAACCGCACCTTCCAGTGGCCAAGATGTTGATGGTTCTACTCCACAATGCAACACCAGAGCAGAACTCTAA | 1605 | 44.36 | MNGKDEFEVENRTSDPMSISSGWQFAAAANLTNESVGFVSTGNPSVVSNGDLGVSSCPSTSMSNLFTSTLLNHHTESQNSGFCTSFNEQNSIVASNTTVVDGEGLNSLRSNGDTRTLGMDWNQQNPWMKGIFSGNVPGIFPANLSQLPADSAFIERAARFSCFNSGVFGAPPTGPFGISDSIGIHSGSGFGRQEVISRNGASKDVSLPMELEAKEKSPSKNEKDSEMSQDRTKQGCVGESGNDSDEAGFSGGQEELGTLGGAITEPSTEGLCFKKRKRGEQNVGLGQVKEAPQQINETAKNGAFSQQKGDQNPSSTTNKPAGKQGKQDSQPSDAPKEEYIHVRARRGQATNSHSLAERVRREKISERMRLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLAKEIIQSKAGPSLFGFPPDLPVPYLPQHPSHHGLIPPCLPNMGSSPDLLRRTINSQLTSLVGGFKEPVQLPNRWENELHNVVPMNFDVTAPSSGQDVDGSTPQCNTRAEL | 534 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 8056607 | 8059166 | - | CcPI632755_01g007670.1 | Cco01g0767 | 169629 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco01g0767 | 534 | Gene3D | - | 345 | 419 | IPR036638 | GO:0046983(InterPro) | |
Cco01g0767 | 534 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 348 | 398 | IPR011598 | GO:0046983(InterPro) | |
Cco01g0767 | 534 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 145 | 449 | IPR024097 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro) | |
Cco01g0767 | 534 | SMART | finulus | 354 | 404 | IPR011598 | GO:0046983(InterPro) | |
Cco01g0767 | 534 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 346 | 417 | IPR036638 | GO:0046983(InterPro) | |
Cco01g0767 | 534 | CDD | bHLH_AtBPE_like | 338 | 423 | - | - | |
Cco01g0767 | 534 | MobiDBLite | consensus disorder prediction | 200 | 272 | - | - | |
Cco01g0767 | 534 | MobiDBLite | consensus disorder prediction | 300 | 329 | - | - | |
Cco01g0767 | 534 | MobiDBLite | consensus disorder prediction | 300 | 335 | - | - | |
Cco01g0767 | 534 | MobiDBLite | consensus disorder prediction | 208 | 230 | - | - | |
Cco01g0767 | 534 | FunFam | Basic helix-loop-helix transcription factor | 345 | 417 | - | - | |
Cco01g0767 | 534 | MobiDBLite | consensus disorder prediction | 513 | 534 | - | - | |
Cco01g0767 | 534 | Pfam | Helix-loop-helix DNA-binding domain | 351 | 399 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco01g0767 | Cco-Chr1:8056607 | Cco05g2606 | Cco-Chr5:34317066 | 3.70E-106 | dispersed | |
Cco01g0767 | Cco-Chr1:8056607 | Cco02g0529 | Cco-Chr2:4951182 | 2.60E-43 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58593 | PF00010 | HLH | 6.60E-06 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco01g0767 | - | - | - | 0.0 |