Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0777 ATGGAAATTAGGGGGAAAAATGGGTTACTGTTTTGTCTGGCTTTGCTTTGGTTATGGGCTTTTCCAAGTGAGGCTTCAACAAACAAAGATTTTAACCCTGAGGTTCAAGCTTTGATGGGGATCAAAGCTGCTTTGAAGGATCCTCATTCTGTTCTGACTTGGGATGACAATGCTGTGGATGCATGCACTTGGAATTTCATCACTTGCTCTCCCGATAAACTAGTCATTGGCATAGGAGCTCCAAGCCAAAACTTTTCTGGTACACTCTCACCAAGTATTGCAAATTTGACAAACCTCCAATTTCTGCTTCTTCAGAATAACAATATATCAGGAAAAATCCCCAATGAGATTAGCAAGATACCTAAACTTCGCACACTTGATCTTTCAAACAACTTGTTCTCTGGAGAAATTCCCAGCTCTTTCTCCAATATGAAAAGCCTTCAATACCTGAGACTCAACAATAACACCTTTTCAGGGCCAATCCCAGCATCACTGGCTAACATGACCCAGCTTGCCCTGCTGGACTTGTCCTATAATAATTTGAGCAGTCCTGTGCCCAGACTGCTGGCTAAGACATTTAACTTTACCGGAAACTCTTTGATATGTTCCCCTGGAATTAAGGAAGTATGCTATGGAACAACTCCATTGCCACTTTCTTTTGTTGTTACTAATTCCACATATTCTCAACCTCCTAGGAGACACAAAGGCCAGAGAATTGCCTTAGTCATTGGTCTCAGCTTGCTCTGCATCTGTCTGTTCACTCTTGCATATGGTTTCTTTTTCTGGCGGAAGCATAGGCACAACCAGCAAATATTCTTTGAAGCTAATGATTGGCATCGGGAAGAACATAGCCTAGGGAACATAAAGAGGTTCCAGTTCAGAGAACTCCAGAATGCTACCCACAATTTCAGCAGTAAAAACTTGGTTGGAAAAGGTGGTTTTGGAAATGTATACAGAGGATATCTACAAGATGGCACCATTGTAGCTGTAAAGAGACTCAAAGATGGGAATGCTGTGAGAGGAGAGATCCAATTTCAGACTGAAGTGGAAATGATAAGCTTGGCAGTGCATAGGAACCTACTCAGATTATATGGTTTCTGTATGACAGAAACCGAGAGGCTTTTGGTCTATCCATACATGTCGAATGGCAGTGTCGCTACCCGTCTTAAAGCAAAACCAGCTCTGGATTGGAGTACAAGGAAGAGAATTGCCTTGGGAGCTGCTAGGGGTTTGTTATACCTACACGAACAGTGTGATCCAAAAATAATTCACAGGGATGTGAAAGCTGCAAATATACTGCTTGATGATTTCTGTGAGGCAGTGGTGGGTGATTTTGGGCTGGCAAAGCTGTTAGATCACAGAGACTCACATGTCACTACTGCAGTGAGGGGAACTGTTGGGCACATTGCACCAGAGTATCTATCAACAGGCCAATCCTCTGAGAAAACAGATGTTTTCGGGTTTGGAATTCTACTACTTGAGCTCATATCAGGTCAAAGAGCTCTTGAATTTGGAAAAGCAGCAAACCAAAAGGGTGCAATACTGGACTGGGTAAAGAAGATACACCAAGAAAAGAAGCTTGAAATGCTTGTTGACAAAGACTTGAAAAGTAATTATGACCCGATTGAACTTGAAGAAATTGTTCGAGTCGCTCTCTTGTGCATTCAATATCTTCCAAGCCACAGGCCTAAGATGTCTGAAGTGGTCAGGATGCTAGAAGGAGATGGGCTTGCAGAGAAATGGGAAGCTTCCCAAAGGGCAGAAGCAAGCAGGAGCAGAGCCAATGAGTTCTCCTCTTCAGAACGTTACTCTGATCTTACTGATGACTCTTCATTGTTTGCTCAAGCGATAGAGCTCTCGGGACCGAGATAA 1872 42.95 MEIRGKNGLLFCLALLWLWAFPSEASTNKDFNPEVQALMGIKAALKDPHSVLTWDDNAVDACTWNFITCSPDKLVIGIGAPSQNFSGTLSPSIANLTNLQFLLLQNNNISGKIPNEISKIPKLRTLDLSNNLFSGEIPSSFSNMKSLQYLRLNNNTFSGPIPASLANMTQLALLDLSYNNLSSPVPRLLAKTFNFTGNSLICSPGIKEVCYGTTPLPLSFVVTNSTYSQPPRRHKGQRIALVIGLSLLCICLFTLAYGFFFWRKHRHNQQIFFEANDWHREEHSLGNIKRFQFRELQNATHNFSSKNLVGKGGFGNVYRGYLQDGTIVAVKRLKDGNAVRGEIQFQTEVEMISLAVHRNLLRLYGFCMTETERLLVYPYMSNGSVATRLKAKPALDWSTRKRIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDFCEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELISGQRALEFGKAANQKGAILDWVKKIHQEKKLEMLVDKDLKSNYDPIELEEIVRVALLCIQYLPSHRPKMSEVVRMLEGDGLAEKWEASQRAEASRSRANEFSSSERYSDLTDDSSLFAQAIELSGPR 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8122579 8125567 - CcPI632755_01g007770.1 Cco01g0777 169639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0777 623 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 9 623 - -
Cco01g0777 623 SUPERFAMILY L domain-like 34 203 - -
Cco01g0777 623 Pfam Leucine Rich repeats (2 copies) 97 132 IPR025875 -
Cco01g0777 623 MobiDBLite consensus disorder prediction 583 605 - -
Cco01g0777 623 ProSitePatterns Protein kinases ATP-binding region signature. 309 331 IPR017441 GO:0005524(InterPro)
Cco01g0777 623 Pfam Protein tyrosine and serine/threonine kinase 306 572 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco01g0777 623 Pfam Leucine rich repeat N-terminal domain 32 70 IPR013210 -
Cco01g0777 623 SMART serkin_6 303 572 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco01g0777 623 Pfam Leucine rich repeat 138 181 IPR001611 GO:0005515(InterPro)
Cco01g0777 623 ProSiteProfiles Protein kinase domain profile. 303 582 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco01g0777 623 SUPERFAMILY Protein kinase-like (PK-like) 282 573 IPR011009 -
Cco01g0777 623 Gene3D Phosphorylase Kinase; domain 1 272 379 - -
Cco01g0777 623 ProSitePatterns Serine/Threonine protein kinases active-site signature. 422 434 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco01g0777 623 Gene3D Ribonuclease Inhibitor 31 212 IPR032675 -
Cco01g0777 623 FunFam Somatic embryogenesis receptor kinase 1 272 379 - -
Cco01g0777 623 MobiDBLite consensus disorder prediction 590 605 - -
Cco01g0777 623 Gene3D Transferase(Phosphotransferase) domain 1 380 592 - -
Cco01g0777 623 FunFam Somatic embryogenesis receptor-like kinase 1 380 592 - -
Cco01g0777 623 FunFam Putative LRR receptor-like serine/threonine-protein kinase 31 212 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0777 Cco-Chr1:8122579 Cco05g2594 Cco-Chr5:34214658 7.30E-231 dispersed
Cco01g0777 Cco-Chr1:8122579 Cco11g0522 Cco-Chr11:5505113 7.10E-218 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86511 PF00069 Pkinase 2.10E-44 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0777 - - - 0.0