Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco01g0785 | ATGGTTGTTGCTCTTGAAACCACCCGATTCCATGTTCTTGCTGTCGATGATAGCTTCATCGATAGGAAGTTGATTGAACGCCTCCTCAAAACCTCTTCCTATCATGTTACTGCAGTTGATTCCGGTACGAAGGCCTTGGAATTTCTTGGTCTCGTTGAAGATCATGATCACGATGAAGAAACAGACTCCAAAATCGCTCCCTCAAATCATCATCATCAAGAAGTGGATGTAAATTTGATCATCACGGATTACAGTATGCCTGGAATGAGTGGTTACGAACTCCTTAGGAAGATCAAGGAATCGAAATCTCTCAAAGACATACCAGTTGTGATTATGTCCTCTGAGAATGTTCCTTCAAGAATCAATAGATGCTTGGAAGAAGGAGCGGAAGAATTCTTCCTCAAACCAGTTCAATTGTCTGATGTGAGGAAGTTGAGACCTCATTTGATTAAAGAAAAATCCGCCAGGAATTGA | 474 | 41.35 | MVVALETTRFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVEDHDHDEETDSKIAPSNHHHQEVDVNLIITDYSMPGMSGYELLRKIKESKSLKDIPVVIMSSENVPSRINRCLEEGAEEFFLKPVQLSDVRKLRPHLIKEKSARN | 157 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 8246308 | 8247043 | + | CcPI632755_01g007850.1 | Cco01g0785 | 169647 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco01g0785 | 157 | ProSiteProfiles | Response regulatory domain profile. | 11 | 150 | IPR001789 | GO:0000160(InterPro) | |
Cco01g0785 | 157 | SMART | REC_2 | 10 | 146 | IPR001789 | GO:0000160(InterPro) | |
Cco01g0785 | 157 | Gene3D | - | 11 | 157 | - | - | |
Cco01g0785 | 157 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 9 | 152 | IPR045279 | GO:0009736(InterPro) | |
Cco01g0785 | 157 | Pfam | Response regulator receiver domain | 12 | 143 | IPR001789 | GO:0000160(InterPro) | |
Cco01g0785 | 157 | SUPERFAMILY | CheY-like | 9 | 148 | IPR011006 | - | |
Cco01g0785 | 157 | CDD | REC_typeA_ARR | 12 | 145 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco01g0785 | Cco-Chr1:8246308 | Cco05g2946 | Cco-Chr5:36923275 | 1.00E-51 | dispersed | |
Cco01g0785 | Cco-Chr1:8246308 | Cco05g2760 | Cco-Chr5:35446651 | 4.40E-39 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58595 | PF00072 | Response_reg | 1.30E-20 | CL0304 | Cco | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco01g0785 | K14492 | - | csv:101210839 | 279.256 |