Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0785 ATGGTTGTTGCTCTTGAAACCACCCGATTCCATGTTCTTGCTGTCGATGATAGCTTCATCGATAGGAAGTTGATTGAACGCCTCCTCAAAACCTCTTCCTATCATGTTACTGCAGTTGATTCCGGTACGAAGGCCTTGGAATTTCTTGGTCTCGTTGAAGATCATGATCACGATGAAGAAACAGACTCCAAAATCGCTCCCTCAAATCATCATCATCAAGAAGTGGATGTAAATTTGATCATCACGGATTACAGTATGCCTGGAATGAGTGGTTACGAACTCCTTAGGAAGATCAAGGAATCGAAATCTCTCAAAGACATACCAGTTGTGATTATGTCCTCTGAGAATGTTCCTTCAAGAATCAATAGATGCTTGGAAGAAGGAGCGGAAGAATTCTTCCTCAAACCAGTTCAATTGTCTGATGTGAGGAAGTTGAGACCTCATTTGATTAAAGAAAAATCCGCCAGGAATTGA 474 41.35 MVVALETTRFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVEDHDHDEETDSKIAPSNHHHQEVDVNLIITDYSMPGMSGYELLRKIKESKSLKDIPVVIMSSENVPSRINRCLEEGAEEFFLKPVQLSDVRKLRPHLIKEKSARN 157
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8246308 8247043 + CcPI632755_01g007850.1 Cco01g0785 169647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0785 157 ProSiteProfiles Response regulatory domain profile. 11 150 IPR001789 GO:0000160(InterPro)
Cco01g0785 157 SMART REC_2 10 146 IPR001789 GO:0000160(InterPro)
Cco01g0785 157 Gene3D - 11 157 - -
Cco01g0785 157 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 152 IPR045279 GO:0009736(InterPro)
Cco01g0785 157 Pfam Response regulator receiver domain 12 143 IPR001789 GO:0000160(InterPro)
Cco01g0785 157 SUPERFAMILY CheY-like 9 148 IPR011006 -
Cco01g0785 157 CDD REC_typeA_ARR 12 145 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0785 Cco-Chr1:8246308 Cco05g2946 Cco-Chr5:36923275 1.00E-51 dispersed
Cco01g0785 Cco-Chr1:8246308 Cco05g2760 Cco-Chr5:35446651 4.40E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58595 PF00072 Response_reg 1.30E-20 CL0304 Cco TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0785 K14492 - csv:101210839 279.256