Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0795 ATGGGCAAGAAGAAGGGCTGGTTTTATTTAGTCAAGAAGCTATTTGTTTCAGAGACACCGCCAAAGCCTGAGAAGAAGCAAAAGAGATGGAAATGGGTGTTTGGAAGGATGAGGAACAAGAGACTAGCCACACTGACAGCACCATCGCCGGCAAAAGTGACAACCAGCCAAGAGGAGGAAGAGGAGAGGAAGCAGGCTCTTTCTGTGGCCATTGCGACCACTGCAGCGGCCGAGGCAGCAGTTGCAGCAGCTAAGGCTGCTGTTGAGGTTGTTTGGCTCACAGGGACCCCTCAATCTCATCGACAAGAGGCTGCAGATGAAGTCGTTAAGCCTCTCAAGAAGGCCCCTCCATCTGATCTCCTTAAACGTGAAAGGGAAATCCATGATATTGCTGCTATTACTATCCAAACCGCTTTCCGTGGCTTCCTTGCGAGAAAAGCATTGAGAGCATTGAAAGGAATAGTGAGGCTACAGGCAATTATTAGAGGGAGAGCTGTTAGGCGCCAAGCCATTGCCACTTTGAAGTGCTTGCAGTCCATCGTTAGCATACAATCACAAGTCTGTTCAAATAGACTTCATCTTCCTCAAAACACTTTCAATTCTCCTGAAACGAAGCAGTTTCAGAGCTTGAAAGATAAGATCATAAAGTTGGATTCGAACGATCAAAGGTGGGATGATAGCCTATTATCAAAAGAAGAAGCAGATTCAGCGTTTTTGAGCAGGAAAGAAGCAGTGATTAGGAGAGAGCGAGTCAAGGAATACTTATTTGCCCACAGGAGGTCTGCAGAATCAGAACGAAAGAAGGTAAGAGGAAGATGGAGATACTGGCTAGACCAATGGGTCGACACCCAACTTTCCAAAAGCAAAGAACTCGAAGATTTGGACTCCATGTTCACCTCAAATCCAAAACACAATGAGATAACAAACGACAGATTCAAAACAAACCCAACAACAAAAAACATGGACAGAACAATAGAAGAACACCCCAACCAATCTCCATCTCAAAAACCAGTTCTGAAAAAGCTCTCTCACCACAAGAAGCAACGTTCATTGGAAGGTGGAATAGACTCAAACAGCTCATTTTCAAGCTCCCCACTGGTGCCAACATACATGGCTGCCACTGAATCAGCAAAGGCAAAAGCAAGGTCCTTGAGCTCCCCCAAGCTAAGGCCAGCAGGGGGATTGGACACATGCTCTGATGGGAATTCTCCATGCAAGACAAAGCAGCTCAGTTTGGTGTCTTCAATGGTGAGTGAAGTTGGAATTAGCAGTGGGAGAAGAGGTTTTCATCAGCAGCAAAGATCACCAGGGCTGAAGGGACTTCCAGGGCCAACAAGATCAAGCAGAACTCTCACCAAGGATTTGAGCATTGATTCTGAGCATTCCTTGCCAAACTGGGATAGACAAAGTGCCTTCCAATGA 1422 46.13 MGKKKGWFYLVKKLFVSETPPKPEKKQKRWKWVFGRMRNKRLATLTAPSPAKVTTSQEEEEERKQALSVAIATTAAAEAAVAAAKAAVEVVWLTGTPQSHRQEAADEVVKPLKKAPPSDLLKREREIHDIAAITIQTAFRGFLARKALRALKGIVRLQAIIRGRAVRRQAIATLKCLQSIVSIQSQVCSNRLHLPQNTFNSPETKQFQSLKDKIIKLDSNDQRWDDSLLSKEEADSAFLSRKEAVIRRERVKEYLFAHRRSAESERKKVRGRWRYWLDQWVDTQLSKSKELEDLDSMFTSNPKHNEITNDRFKTNPTTKNMDRTIEEHPNQSPSQKPVLKKLSHHKKQRSLEGGIDSNSSFSSSPLVPTYMAATESAKAKARSLSSPKLRPAGGLDTCSDGNSPCKTKQLSLVSSMVSEVGISSGRRGFHQQQRSPGLKGLPGPTRSSRTLTKDLSIDSEHSLPNWDRQSAFQ 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8378250 8380904 + CcPI632755_01g007950.1 Cco01g0795 169657

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0795 473 ProSiteProfiles IQ motif profile. 152 179 - -
Cco01g0795 473 PANTHER IQ-DOMAIN 5-RELATED 11 406 - -
Cco01g0795 473 Pfam IQ calmodulin-binding motif 131 149 IPR000048 GO:0005515(InterPro)
Cco01g0795 473 MobiDBLite consensus disorder prediction 380 404 - -
Cco01g0795 473 MobiDBLite consensus disorder prediction 302 363 - -
Cco01g0795 473 ProSiteProfiles IQ motif profile. 128 156 - -
Cco01g0795 473 SMART iq_5 127 149 IPR000048 GO:0005515(InterPro)
Cco01g0795 473 MobiDBLite consensus disorder prediction 306 326 - -
Cco01g0795 473 MobiDBLite consensus disorder prediction 423 473 - -
Cco01g0795 473 MobiDBLite consensus disorder prediction 445 473 - -
Cco01g0795 473 Gene3D - 128 178 - -
Cco01g0795 473 Pfam Protein of unknown function (DUF4005) 354 433 IPR025064 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0795 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0795 Cco-Chr1:8378250 Cco10g1558 Cco-Chr10:28781251 2.40E-24 dispersed
Cco01g0795 Cco-Chr1:8378250 Cco09g2240 Cco-Chr9:36699663 8.00E-28 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco09g2240 . 1 479 IQD Protein Family AT3G52290 52.9 4.8e-104 375.2
Cco05g2347 . 1768 1977 IQD Protein Family AT2G26410 51.2 2.0e-43 174.1
Cco03g1216 . 34 441 IQD Protein Family AT3G22190 57.2 1.0e-95 347.4
Cco05g2036 . 1 438 IQD Protein Family AT2G26180 61.6 2.7e-120 429.1
Cco04g2133 . 25 298 IQD Protein Family AT2G33990 52.9 1.2e-62 236.9
Cco07g1069 . 109 292 IQD Protein Family AT2G33990 52.9 1.5e-47 186.8
Cco04g2133 . 80 246 IQD Protein Family AT3G15050 61.7 2.5e-55 212.6
Cco07g1069 . 112 285 IQD Protein Family AT3G15050 61.0 3.0e-53 205.7
Cco01g0795 . 121 473 IQD Protein Family AT5G13460 50.7 3.3e-76 282.7
Cco06g0276 . 1 508 IQD Protein Family AT4G00820 51.5 9.7e-115 411.0
Cco03g1666 . 1 391 IQD Protein Family AT3G16490 50.2 2.0e-64 243.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007465 1 2 1 1 0 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 0 35