Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco01g0811 | ATGGCATCTGGAAGTCCTTATTTTGATGATTTGCGGAGCAAACCAGAAGTTATTGATCCTCCTCAGAATGAAGATATGATGGACATCAGGGAAACCGTGGATGATCCAGTTCAAAATGAACTTAAACCGAACACTGCTGTCTCCAGCAGCGTTCGCGAGCTTTTGGAATGCCCAGTGTGTTTGAACGCAATGTACCCTCCAATACATCAGTGCTCAAATGGCCACACACTGTGCTCTGGTTGCAAGCCTCGGGTGCACAATCGCTGCCCTACATGTAGGCATGAACTTGGCAATATTAGATGCCTTGCGTTGGAGAAGGTGGCCGCATCTCTAGAACTTCCGTGTAAATATCATAGCTATGGTTGCATTGGCATATATCCATATTACAGCAAGGTCAAACATGAATCCCAATGTGTTTATAGACCTTATAGCTGTCCATATGCTGGATCCGAATGTTCAGTCGTCGGTGATATACCCTATTTGGTGGCCCACCTGAAAGACGATCATAAAGTAGACATGCACAGTGGAAGCACATTCAACCATCGTTATGTAAAATCAAACCCACAAGAAGTTGAAAATGCAACGTGGATGCTAACGGTTTTCAGTTGCTTTGGTCAGTACTTTTGCCTGCATTTCGAAGCTTTCCAGCTCGGGTTGGCTCCAGTATACATCGCTTTTTTACGGTTCATGGGTGATGATAATGATGCAAAGAACTACAGCTATAGTCTTGAGGTGGGTGGAAATGGGAGGAAGATGGTTTGGCAAGGGGTGCCCAGAAGCATCAGGGACAGCCATCGGAAAGTTCGGGACAGCTTCGATGGGCTCATTATCCAACGCAACATGGCTCTCTTCTTCTCTGGTGGGGACCGGAAGGAACTTAAGCTTAGAGTGACTGGTAGAATTTGGAAAGAACAGTGA | 918 | 45.86 | MASGSPYFDDLRSKPEVIDPPQNEDMMDIRETVDDPVQNELKPNTAVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYHSYGCIGIYPYYSKVKHESQCVYRPYSCPYAGSECSVVGDIPYLVAHLKDDHKVDMHSGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGLAPVYIAFLRFMGDDNDAKNYSYSLEVGGNGRKMVWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ | 305 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 8531273 | 8532935 | + | CcPI632755_01g008110.1 | Cco01g0811 | 169673 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco01g0811 | 305 | Pfam | Sina, TRAF-like domain | 201 | 298 | IPR018121 | GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro) | |
Cco01g0811 | 305 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 166 | 298 | IPR008974 | GO:0005515(InterPro) | |
Cco01g0811 | 305 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 51 | 99 | IPR013083 | - | |
Cco01g0811 | 305 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 39 | 300 | IPR052088 | GO:0005737(PANTHER)|GO:0061630(PANTHER) | |
Cco01g0811 | 305 | FunFam | E3 ubiquitin-protein ligase SINAT5-like | 15 | 108 | - | - | |
Cco01g0811 | 305 | Pfam | E3 ubiquitin-protein ligase sina/sinah, RING finger | 57 | 92 | IPR049548 | - | |
Cco01g0811 | 305 | SUPERFAMILY | RING/U-box | 51 | 98 | - | - | |
Cco01g0811 | 305 | CDD | RING-HC_SIAHs | 55 | 93 | - | - | |
Cco01g0811 | 305 | Pfam | Sina, zinc finger | 106 | 181 | - | - | |
Cco01g0811 | 305 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Cco01g0811 | 305 | FunFam | E3 ubiquitin-protein ligase SINAT3 | 109 | 165 | - | - | |
Cco01g0811 | 305 | ProSiteProfiles | Zinc finger RING-type profile. | 57 | 93 | IPR001841 | - | |
Cco01g0811 | 305 | FunFam | E3 ubiquitin-protein ligase SINAT5-like | 166 | 298 | - | - | |
Cco01g0811 | 305 | SUPERFAMILY | TRAF domain-like | 110 | 302 | - | - | |
Cco01g0811 | 305 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 105 | 165 | IPR013083 | - | |
Cco01g0811 | 305 | CDD | Sina | 171 | 299 | - | - | |
Cco01g0811 | 305 | ProSiteProfiles | Zinc finger SIAH-type profile. | 110 | 170 | IPR013010 | GO:0008270(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco01g0811 | Cco-Chr1:8531273 | Cco05g2942 | Cco-Chr5:36885713 | 1.10E-166 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco01g0811 | K04506 | - | csv:101220834 | 642.884 |