Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0813 ATGCCATCCGCTTATTTTGACTGGAACTTAGGCCCTCAAGAGGCTGATTTTATTAGAGACCTTCATGAGTGTTCTCCTGGGATTGCTAATACTCATCATAAAAATTTGGCTGGCGGTCACTCTACCTGCAAAGAGGCTTTTGTCTCCACTGCTTTAGAACCTACAGAAAACAGGGGAAGTATGCTGCCGAAGCCGAGGAAATGGAAAAGGAGAGCACAACCAATGGATCTGGTGGGTTTCAACCAAGCGCTCATTACAAAACCAGTATGGAGAATTATGACCTGCCCATTGTCGTTGGCTTCCAAGCCTTTTGTACGCATCATCATCGGCAGATTTTCCTTTAAATGTATTAAACTATCGCCTCCCTCCCTTTTTAATCTCTTTCACGAGAAGAGAAGAAGCCATCGGCAGAATCATGTTAATCTAGGATATTCATTTCATTCCTCATTTTGTAAACCTATTGCTCCATTCTTTCATGATTTGAGTGCACGTTATTTAAAGCTGGAGATGTCAACCCAGCAGCAAAATTCTGATTCAAATGGCGTTTCAGGCGCCTGTCTCTTTGATCTCCTGTTTCCAGATTCAGAAATGCAAGGCTGGGACTGGAGTCGGATGCGCTCTGATTCAGAAACGCAACGCTGGAATTGGAAGAAAGACCAACAGCTCTCTGGCCCCCAGAAAAGGTTAGAAGATCTGTTGCGGCAGTCTGGTAATAAGTTTTGTGCAGATTGCGGAGCACCGGACCCAAAATGGGTATCGTTAAATTTGGGAGTGTTTATCTGTATAAAGTGTTCTGGAGTACACAGAAGTCTTGGAGTTCATATCTCTAAGGTTTTCTCAGTGAAATTAGATAATTGGACGGATGAACAAGTCAATACTTTGATGAGCATGGGCGGAAACACAGATGTAAACAAGAAGTATGAAGCCGGCATCATCGATGGGAACAGAAAACCAAAACCAGATTCTTGTATAGAGGAGCGCTTCGATTTTATAAGGAGAAAGTATGAACTGCTGCAATTTTATAACGCCACTAGTCATAATTCTAGCGATAACTCATTTAGTAAAAGAAGTTCATCATGCTCCCAAAGTAGTAACCCTTCGAGCAAGAATGGTAGCCACGACAAAAGACACTATGAGAAACAAGCTACTAGGCATCGCATCGGGCATGCATTTCGTAACAGCCGAGTAAGAAGAGATAGTGACCACAAGAGTTTTGACAAGAGCAGCCCTGCAGTCTCAAGACAAGCATCG 1251 43.09 MPSAYFDWNLGPQEADFIRDLHECSPGIANTHHKNLAGGHSTCKEAFVSTALEPTENRGSMLPKPRKWKRRAQPMDLVGFNQALITKPVWRIMTCPLSLASKPFVRIIIGRFSFKCIKLSPPSLFNLFHEKRRSHRQNHVNLGYSFHSSFCKPIAPFFHDLSARYLKLEMSTQQQNSDSNGVSGACLFDLLFPDSEMQGWDWSRMRSDSETQRWNWKKDQQLSGPQKRLEDLLRQSGNKFCADCGAPDPKWVSLNLGVFICIKCSGVHRSLGVHISKVFSVKLDNWTDEQVNTLMSMGGNTDVNKKYEAGIIDGNRKPKPDSCIEERFDFIRRKYELLQFYNATSHNSSDNSFSKRSSSCSQSSNPSSKNGSHDKRHYEKQATRHRIGHAFRNSRVRRDSDHKSFDKSSPAVSRQAS 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8543281 8559965 + CcPI632755_01g008130.1 Cco01g0813 169675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0813 417 MobiDBLite consensus disorder prediction 393 408 - -
Cco01g0813 417 PRINTS HIV Rev interacting protein signature 257 274 IPR001164 GO:0005096(InterPro)
Cco01g0813 417 PRINTS HIV Rev interacting protein signature 278 299 IPR001164 GO:0005096(InterPro)
Cco01g0813 417 PRINTS HIV Rev interacting protein signature 238 257 IPR001164 GO:0005096(InterPro)
Cco01g0813 417 SUPERFAMILY ArfGap/RecO-like zinc finger 226 342 IPR037278 -
Cco01g0813 417 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 216 379 IPR044518 GO:0005096(InterPro)|GO:0005543(InterPro)
Cco01g0813 417 CDD ArfGap 229 335 - -
Cco01g0813 417 ProSiteProfiles ARF GTPase-activating proteins domain profile. 226 348 IPR001164 GO:0005096(InterPro)
Cco01g0813 417 FunFam stromal membrane-associated protein 1 isoform X1 210 346 - -
Cco01g0813 417 MobiDBLite consensus disorder prediction 345 369 - -
Cco01g0813 417 MobiDBLite consensus disorder prediction 345 417 - -
Cco01g0813 417 Pfam Putative GTPase activating protein for Arf 227 342 IPR001164 GO:0005096(InterPro)
Cco01g0813 417 Gene3D Arf GTPase activating protein 205 349 IPR038508 -
Cco01g0813 417 SMART arf_gap_3 226 349 IPR001164 GO:0005096(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0813 Cco-Chr1:8543281 Cco05g2942 Cco-Chr5:36885713 5.90E-59 dispersed
Cco01g0813 Cco-Chr1:8543281 Cco03g0822 Cco-Chr3:8999068 8.30E-37 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0813 K12486 - csv:101215531 431.795