Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0825 ATGTCTTCTTCTCTTTCATGGTTCTTCTTCTTTTCCCTCTCCTTTACGTTTCCCGGTACGGCCGCCTCGGTTTCCGATGATGCAATGTCGCTCCTCATGTTTAAGGGCTCGATTTCGCTCGGAGGCTCTGATGTTCTTCGTGGCTGGAATTTGTCTCTTTCTCACTGCCAGTGGTTTGGAGTTACTTGCGATGGTGTTAACGGTAGAGTTGTTGCGCTGAATATCAGTGGAAATGGTGGTGTTCTGGCGGCGGGTTCTTTACTGGTTGGGAAGTTGAATCCAGCGATTGGAAATCTTGTTGAGCTTCGTGTTTTGTCGCTTCCGAATAATTTGATGTACGGGGAGATTCCGGGGAGTGTTGGTAAGCTTCAGTCGTTGGAGGTTCTAGAGCTTCAGGGGAACAATTTCTCTGGAGAGATTCCAAATCAGATAAGTTCACTTCGATCTCTTCGCCTGCTTAATTTGTCTGATAACTCGTTTTCTGGCTCGATTCCGGGTAAATTGATCAGTTCGACGCGATTAGAAGCAATTGATTTGTCGTACAATCAATTATCTGGTAGTATTCAAGTTGTTGATAATAGATGCGGTGCTTTGAATCATTTGAGGCTTTCGCATAACTTTCTGACTAATAACATTCCGGCGGAGATTGGACAATGTTGGAAACTCAGGACTCTGTTACTCGATGGTAATATATTAGAGGGGCAAATTCCGGCTGAGATCGGCCAAATTTCAGAACTCAGAATTCTTGATGTTTCTAGGAATAGCCTTACCGATTCGATTCCAAAAGGGCTTGGTAATTGCCGGAAGTTGTCGCAGATCGTTTTGACGAATTTGAACGATATCAATCCCGACTACGATAGTTTAAGAGGGGAATTCAACGCCTTCAATGGAGGTATTCCTTCTGAGTTGTTATTGCTTCCAAGTCTGCAAGTTTTATGGGCACCGAGAGGGAATTTTAATGGCGAATTGCCGATTAATTGGAGTTCTTCATGCTCGCTTAGAGTTCTCAATTTAGGGCAAAATTACATCACTGGTACAATACCCGAATCGATTGGGAAATGTGCGAATCTAACTTACCTGGATTTATCTTCAAACAAGCTTCAAGGTAACCTCCCCTCCCAGCTTCGAGTTTCATGTATGGCGTATTTCAATGTTAGCCAGAACAAAATTTCTGGTGTTATTCCCAGATTTGAGAAAGACAGTTTCTGTACGAACTTGATTCCACACGAACCAGCTCCCAGATTCTTAGATCAGGAAGACGATTGGAATTCTTACTTCAATTTTCCTGTTTGGGATTTCCCGAGATTAAATGATAATCTCATAATTTCCCATGATTTTAGCTGGAATAGGTTCAGTGGCTCATTAACTTCAGTCAAAGTGGGAGAAGAGCTTTTGGCTAATGGCCGCAAGTTCTCATACAAATTGTTGCTTAATAGCAACCAGTTCAATGGATCACTTCCCATTGATCTGGTCTCGAACTGTAACGATATGAAGGGTGTTTCTGTTAACTTGAGTTCAAACTTAGTATCAGGTGAGATTTCTGATGCATTTTTTCTCCATTGTCGACAAATGATAGAGTTTGAGGCAGCAAGCAATGAATTAGATAACTCGATTGGACCTCAGATTGGCGACTTGCAGATGCTTCTTCGTCTCGACTTGAGAGGGAATAGATTGTCTGGAGTTTTACCTGATCAGTTGGGAAACTTGCAGAGTTTGAAATGGATGCTTTTGGGGGGAAACAATTTGACTGGAGAGATTCCATCTCGACTTAGTCGATTGACTTCTCTCGTGAGTTTAGATCTTTCTCGGAACATGTTTACAGGAGTTATCCCTGAAAGCTTCTCATATGCTTCAAGACTTGAGATTCTGTTGCTTGATCATAATAGGTTAACTGGGGAAATACCAGCATCTTTCTCTGCCCTTTCACATCTCACTAAATTGGATGTCTCTTTTAACAACCTTTCTGGCCACATTCCTCATCTTCAGCACACATTTGACTGCATTTACTTTGGTGGGAATAAGTTTCTGCATCCATGCCCAGATTCATACTCCGACTCCCCAGCTGGACTTCCGGTTCCTCTCGACGTTGCAAAGTGGAAGAGACGAAGAAAGTTTATGTCCATGATAATCGCTTTGGCTGCCTCCTCAAGTCTAATTTGCTTACTCATAATGATAGCTGTTATCATCATCGTTAAGAGAAGGCTAGGTAAACAAAATACGTTAAAGAAGAAACAAGTGGTGACTTTCTCAGATGCTCCTTCCGATCTGAATTATGATAACGTGGTCCGAGCTACCGAAAATTTCAGCCTTCGTTACCTTATCGGTACCGGTGGCTTCGGATCAACATACAAGGCTGAACTGCCCTCAGGTTTCCTTGTTGCTATAAAGAGACTGTCCATTGGTAGGTTTCAAGGAGGCATCCAACAATTTGACGCAGAAATTCGAACTTTGGGAAGAATACGACACAAAAACCTCGTAACTCTTCTCGGGTATTACGTTGGAGAGGCTGAAATGTTCTTAGTTTACAACTATCTTTCTGGTGGGAACCTTGATACTTTCATTCACGAAAAATCTTGCAAACACGTAAAGCACTCAGTGATCCACAAGATCACTTTGGACATAGCGAGGGCTCTTGCATACCTTCATTACTCCTGTGATCCTAGGATTGTTCATAGAGACATCAAGCCTAGTAACATCTTGCTTGATGAAGACCACAACACCTACATATCAGATTTTGGGTTGGCAAGGCTTCTTGAGGTTTCAGAGACTCATGCCACAACAGATGTGGCAGGAACATTTGGATATGTTGCACCTGAATATGCTACAACTTGCAGGGTCTCGGATAAGGCGGATGTTTATAGCTTTGGAGTTGTGCTACTAGAGTTGCTTTCTGGAAAAAGATCACTCGATCGATCCTTTTCCGACTTTGGGAACGGATTTAACATTGTTACATGGGCAAATATGCTGATCAAGGAAGGTCGTTTTTCTGAGCTTTTCACTCCTGAACTTTGGGAAATGGGACCTAAGGAACACTTACTTGGCATGTTAAAGCTCGCTTCCAATTGCACAGTTGAAATTCTCGCTCTTCGACCGTCGATGAAGCAGGTCGTCGAGACACTGAAACAGTTGTAA 3132 42.62 MSSSLSWFFFFSLSFTFPGTAASVSDDAMSLLMFKGSISLGGSDVLRGWNLSLSHCQWFGVTCDGVNGRVVALNISGNGGVLAAGSLLVGKLNPAIGNLVELRVLSLPNNLMYGEIPGSVGKLQSLEVLELQGNNFSGEIPNQISSLRSLRLLNLSDNSFSGSIPGKLISSTRLEAIDLSYNQLSGSIQVVDNRCGALNHLRLSHNFLTNNIPAEIGQCWKLRTLLLDGNILEGQIPAEIGQISELRILDVSRNSLTDSIPKGLGNCRKLSQIVLTNLNDINPDYDSLRGEFNAFNGGIPSELLLLPSLQVLWAPRGNFNGELPINWSSSCSLRVLNLGQNYITGTIPESIGKCANLTYLDLSSNKLQGNLPSQLRVSCMAYFNVSQNKISGVIPRFEKDSFCTNLIPHEPAPRFLDQEDDWNSYFNFPVWDFPRLNDNLIISHDFSWNRFSGSLTSVKVGEELLANGRKFSYKLLLNSNQFNGSLPIDLVSNCNDMKGVSVNLSSNLVSGEISDAFFLHCRQMIEFEAASNELDNSIGPQIGDLQMLLRLDLRGNRLSGVLPDQLGNLQSLKWMLLGGNNLTGEIPSRLSRLTSLVSLDLSRNMFTGVIPESFSYASRLEILLLDHNRLTGEIPASFSALSHLTKLDVSFNNLSGHIPHLQHTFDCIYFGGNKFLHPCPDSYSDSPAGLPVPLDVAKWKRRRKFMSMIIALAASSSLICLLIMIAVIIIVKRRLGKQNTLKKKQVVTFSDAPSDLNYDNVVRATENFSLRYLIGTGGFGSTYKAELPSGFLVAIKRLSIGRFQGGIQQFDAEIRTLGRIRHKNLVTLLGYYVGEAEMFLVYNYLSGGNLDTFIHEKSCKHVKHSVIHKITLDIARALAYLHYSCDPRIVHRDIKPSNILLDEDHNTYISDFGLARLLEVSETHATTDVAGTFGYVAPEYATTCRVSDKADVYSFGVVLLELLSGKRSLDRSFSDFGNGFNIVTWANMLIKEGRFSELFTPELWEMGPKEHLLGMLKLASNCTVEILALRPSMKQVVETLKQL 1043
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8690719 8693850 - CcPI632755_01g008250.1 Cco01g0825 169687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0825 1043 Pfam Leucine rich repeat N-terminal domain 25 64 IPR013210 -
Cco01g0825 1043 SMART LRR_typ_2 593 616 IPR003591 -
Cco01g0825 1043 SMART LRR_typ_2 243 267 IPR003591 -
Cco01g0825 1043 SMART LRR_typ_2 147 171 IPR003591 -
Cco01g0825 1043 SMART LRR_typ_2 641 667 IPR003591 -
Cco01g0825 1043 SMART LRR_typ_2 545 568 IPR003591 -
Cco01g0825 1043 SMART LRR_typ_2 123 146 IPR003591 -
Cco01g0825 1043 SMART LRR_typ_2 195 219 IPR003591 -
Cco01g0825 1043 FunFam Leucine-rich repeat receptor-like protein kinase 24 190 - -
Cco01g0825 1043 SUPERFAMILY Protein kinase-like (PK-like) 746 1040 IPR011009 -
Cco01g0825 1043 Pfam Leucine Rich Repeat 548 569 IPR001611 GO:0005515(InterPro)
Cco01g0825 1043 Pfam Leucine Rich Repeat 198 219 IPR001611 GO:0005515(InterPro)
Cco01g0825 1043 Pfam Leucine Rich Repeat 246 267 IPR001611 GO:0005515(InterPro)
Cco01g0825 1043 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 443 686 - -
Cco01g0825 1043 Gene3D Transferase(Phosphotransferase) domain 1 845 1043 - -
Cco01g0825 1043 Pfam Leucine rich repeat 101 159 IPR001611 GO:0005515(InterPro)
Cco01g0825 1043 Pfam Leucine rich repeat 595 654 IPR001611 GO:0005515(InterPro)
Cco01g0825 1043 Pfam Leucine rich repeat 332 367 IPR001611 GO:0005515(InterPro)
Cco01g0825 1043 SUPERFAMILY L domain-like 87 661 - -
Cco01g0825 1043 Gene3D Phosphorylase Kinase; domain 1 730 844 - -
Cco01g0825 1043 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 9 1042 IPR050647 -
Cco01g0825 1043 Pfam Protein kinase domain 773 971 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco01g0825 1043 Gene3D Ribonuclease Inhibitor 289 417 IPR032675 -
Cco01g0825 1043 Gene3D Ribonuclease Inhibitor 422 688 IPR032675 -
Cco01g0825 1043 ProSitePatterns Serine/Threonine protein kinases active-site signature. 889 901 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco01g0825 1043 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 845 1043 - -
Cco01g0825 1043 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 732 844 - -
Cco01g0825 1043 ProSitePatterns Protein kinases ATP-binding region signature. 774 796 IPR017441 GO:0005524(InterPro)
Cco01g0825 1043 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 285 371 - -
Cco01g0825 1043 Gene3D Ribonuclease Inhibitor 195 288 IPR032675 -
Cco01g0825 1043 Gene3D Ribonuclease Inhibitor 26 194 IPR032675 -
Cco01g0825 1043 SMART serkin_6 768 1043 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco01g0825 1043 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 193 282 - -
Cco01g0825 1043 ProSiteProfiles Protein kinase domain profile. 768 1043 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0825 Cco-Chr1:8690719 Cco05g2590 Cco-Chr5:34157701 3.20E-61 dispersed
Cco01g0825 Cco-Chr1:8690719 Cco07g1705 Cco-Chr7:31052254 3.90E-11 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86512 PF00069 Pkinase 5.30E-44 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0825 - - - 0.0