Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0854 ATGAGTGAAACCATCGAGAATTACTTGAGAAAGAACTTCGACCTCGATTCCAAGAGTCCGTCAGAGGAGGCTCAAATGCGATGGCGATCCGCCGTTTCTATTGTCAAGAATCGCCGCCGGAGGTTTCGTATGGTTGCTGATCTCGAAAAGCGAGCTCAGGCTGAGGAAAAGCGCAGGAAACTCCAGGAAAAGATACGAGTAGCTCTATACGTACAAAAAGCAGCATTGCATTTCATTGATGCCGGGAAGCGAGGTGATTACAAGCTCTCCACAGAAGTTAGGGAAGCTGGTTTTGGAGTTGAACCCGATGCATTAGCATCCATGGTTCAAACCCACAACACGAAGAGTTTGGAACATTATGGGGGCGTTGGGGGATTGGCAAGAGAATTAAACGTTTCTTTGAAAGATGGAATTGTTACAAGTGAAATACCTTCAAGGCAGAACATATACGGCATCAACCGTTATGTTGAGAAGCCTTCAAGAGGCTTTTGGATGTTTGTATGGGAAGCCCTGCATGATTTGACTCTCATCATTCTCTTGGTTTCTGCTGTGGTTTCCATTGGCGTTGGAAATGCAACTGAAGGTTGGCCTAAAGGCATGTACGATGGACTTGGAATAATAATGAGTATTTTTTTGGTCGTGATAGTAACGGCAATCAGTGACTATAATCAGTCCTTGCAATTTAAGGACCTGGAGAAGCAGAAGAAAAACATTATCATTCAAGTTACTCGAGATGGATGCAGACAGAAGGTTTCTATTTACGACTTGGTGGTTGGAGATATTGTTCATTTGTCTATTGGAGATCAAGTCCCTGCTGATGGCATTTTGGTGTCAGGCTACAGCTTATCACTTGACGAATCGAGCTTATCAGGTGAAAGTGAACCCGTAAATGTAGATGACAATAGGCCTTTTCTTCTAGCAGGGACCAAAGTGCAGGATGGATCTGGTAAAATGCTAGTTGCCTCAGTTGGCATGAGAACTGAATGGGGAAGATTGATGGTCACTTTGAGTGAAGGAGGAGATGACGAAACACCACTTCAGGTAAAGCTTAATGGGGTTGCGACAATCATTGGAAAGATTGGCTTGGTATTCGCGGTGTTAACATTCGTTGTTCTGATCTCAAGGTATTTTGTGTATAAAGCATTACACAATCAGATTGGGCACTGGTCCTCCAAAGATGCATCAACGCTTCTGAATTACTTTGCCATTGCAGTAATTATAATTGTTGTCGCAGTTCCAGAAGGATTGCCTCTGGCCGTGACACTAAGTCTTGCTTTTGCCATGAAAAGGTTAATGAAGGATAAGGCACTCGTGAGGCATCTCTCTGCTTGTGAGACTATGGGTTCTGCAACCTGCATTTGCACCGATAAAACAGGTACATTGACAACAAACCATATGGTCGTTGACAAAATGTGGATCTGTGAAGAAACGAGGACAATAAAAAGTTCCCACGACGAAACTGCTTTGAAAAATTCTGTAAATGAAACGGTATACAATCTCCTTATACAATCTATATTTCAAAATACCAGCTCAGAGGTGGTGAAAGGCAAAGACGGGAGAAACACCATTTTAGGCACTCCAACTGAGACTGCATTGCTAGAATTTGGCTTGCTTTTGGGTGGTACTTTTGGTACATTGAATGATGAGTATAAGATCGTGAAAGTGGAGCCATTCAATTCAAATAGAAAGAAAATGTCTGTTCTTGTGGCTCTTCCCGGTGGTGGCTTTCGCGCATTTTGCAAGGGAGCATCAGAAATCATTTTAGCTATGTGTGACAAGGTTCTCAGTTCTAATGGAGAAGCGTTGCCTCTTTCAGACGAACAAAGAACAAACATCTCTAATATCATTAATAGCTTTGCCAACGATGCGCTTAGAACTCTATGCATCGCCTACAAGGATATAGAAGCTCTTTCAGCACCAGAGAAAATTCCAGATGATGATTTTACTTTAATAGCTGTTATTGGCATTAAAGATCCTGTACGTCCGGGTGTAAAGGAGGCAGTTCAGGCTTGTTTGGCTGCTGGAATTACTGTAAGGATGGTAACTGGGGATAACATCAATACGGCTAAAGCCATAGCCAAAGAGTGTGGCATTTTGACAGAAGGTGGTTTAGCAATAGAAGGACCAGAGTTCCGCAACAAGAGCCAAGATGAAATGGAGAAGTTAATACCAAAACTCCAGGTGATGGCTCGATCTTCTCCTCTTGACAAGCATACGTTGGTAGGACAGTTAAGGAAAACGTTCAAAGAAGTGGTGGCTGTCACAGGTGATGGGACTAATGATGCCCCTGCTTTGCATGAGGCAGACATTGGATTGGCCATGGGTATTGCGGGAACAGAGGTTGCAAAAGAAAATGCGGACGTAGTCATAATGGATGATAACTTCACAACTATTGTTAATGTTGCAAGATGGGGACGTGCAGTCTACATCAACATTCAGAAGTTCGTTCAGTTCCAGCTTACAGTCAATGTAGTCGCTCTCATGCTCAATTTTATATCTGCATGCGTTTCAGGGTCTGCTCCTCTGACGGCTGTTCAAATGCTATGGGTGAACTTGATAATGGACACGCTGGGAGCTCTAGCTTTGGCCACAGAGCCTCCCAACGAGGGGCTGATGCAAAGAAAACCAATTGGTAGAAACGTCAATATCATCACTGGGATTATGTGGAGAAACATCATCGGTCAGAGCTTCTATCAAATCACAGTCTTACTAATCCTCAGATTCGAAGGAAAACGCCTGCTCAATCTCACTGGTCCTGATTCAAGCATCATTCTCGACACATTCATTTTCAACTCCTTCGTCTTTTGCCAGGTGTTCAATGAAATAAACAGCCGTGACATGGAGAAGATAAACGTGTTCAAAGGGATATTTGGGAGTTGGGTATTCATTGGAGTGATGGCATCGACAGTAGGATTCCAAATCATAATAGTGGAGTTTCTTGGGACATTCGCAGAAACAGTAGGATTAAGCTGGAGATTATGGGTAATCAGCATTATAATTGGAGCTGTGAGTTTGCCAATAGCAATGGGGCTGAAATGCATTCCTGTTTCAAACTCTAAAACCGCATGCCACTTCCACGATGGTTATGAGCCACTCCCCACTGGTCCTGACTTGGCTTGA 3120 43.33 MSETIENYLRKNFDLDSKSPSEEAQMRWRSAVSIVKNRRRRFRMVADLEKRAQAEEKRRKLQEKIRVALYVQKAALHFIDAGKRGDYKLSTEVREAGFGVEPDALASMVQTHNTKSLEHYGGVGGLARELNVSLKDGIVTSEIPSRQNIYGINRYVEKPSRGFWMFVWEALHDLTLIILLVSAVVSIGVGNATEGWPKGMYDGLGIIMSIFLVVIVTAISDYNQSLQFKDLEKQKKNIIIQVTRDGCRQKVSIYDLVVGDIVHLSIGDQVPADGILVSGYSLSLDESSLSGESEPVNVDDNRPFLLAGTKVQDGSGKMLVASVGMRTEWGRLMVTLSEGGDDETPLQVKLNGVATIIGKIGLVFAVLTFVVLISRYFVYKALHNQIGHWSSKDASTLLNYFAIAVIIIVVAVPEGLPLAVTLSLAFAMKRLMKDKALVRHLSACETMGSATCICTDKTGTLTTNHMVVDKMWICEETRTIKSSHDETALKNSVNETVYNLLIQSIFQNTSSEVVKGKDGRNTILGTPTETALLEFGLLLGGTFGTLNDEYKIVKVEPFNSNRKKMSVLVALPGGGFRAFCKGASEIILAMCDKVLSSNGEALPLSDEQRTNISNIINSFANDALRTLCIAYKDIEALSAPEKIPDDDFTLIAVIGIKDPVRPGVKEAVQACLAAGITVRMVTGDNINTAKAIAKECGILTEGGLAIEGPEFRNKSQDEMEKLIPKLQVMARSSPLDKHTLVGQLRKTFKEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKENADVVIMDDNFTTIVNVARWGRAVYINIQKFVQFQLTVNVVALMLNFISACVSGSAPLTAVQMLWVNLIMDTLGALALATEPPNEGLMQRKPIGRNVNIITGIMWRNIIGQSFYQITVLLILRFEGKRLLNLTGPDSSIILDTFIFNSFVFCQVFNEINSRDMEKINVFKGIFGSWVFIGVMASTVGFQIIIVEFLGTFAETVGLSWRLWVISIIIGAVSLPIAMGLKCIPVSNSKTACHFHDGYEPLPTGPDLA 1039
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 9091181 9098012 - CcPI632755_01g008540.1 Cco01g0854 169716
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0854 1039 FunFam Calcium-transporting ATPase 464 659 - -
Cco01g0854 1039 SFLD C1.7: P-type atpase like 436 807 - -
Cco01g0854 1039 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 460 664 IPR023299 GO:0000166(InterPro)
Cco01g0854 1039 ProSitePatterns E1-E2 ATPases phosphorylation site. 456 462 IPR018303 -
Cco01g0854 1039 PANTHER CATION TRANSPORTING ATPASE 74 1017 - GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER)
Cco01g0854 1039 FunFam Calcium-transporting ATPase 652 800 - -
Cco01g0854 1039 PRINTS H+-transporting ATPase (proton pump) signature 612 630 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco01g0854 1039 PRINTS H+-transporting ATPase (proton pump) signature 755 771 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco01g0854 1039 PRINTS H+-transporting ATPase (proton pump) signature 787 812 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco01g0854 1039 Pfam Cation transporter/ATPase, N-terminus 118 186 IPR004014 -
Cco01g0854 1039 NCBIfam calcium-translocating P-type ATPase, PMCA-type 110 1016 IPR006408 GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro)
Cco01g0854 1039 PRINTS P-type cation-transporting ATPase superfamily signature 755 774 - -
Cco01g0854 1039 PRINTS P-type cation-transporting ATPase superfamily signature 285 299 - -
Cco01g0854 1039 PRINTS P-type cation-transporting ATPase superfamily signature 652 663 - -
Cco01g0854 1039 PRINTS P-type cation-transporting ATPase superfamily signature 779 791 - -
Cco01g0854 1039 PRINTS P-type cation-transporting ATPase superfamily signature 454 468 - -
Cco01g0854 1039 PRINTS P-type cation-transporting ATPase superfamily signature 674 684 - -
Cco01g0854 1039 SUPERFAMILY Calcium ATPase, transduction domain A 239 333 IPR008250 -
Cco01g0854 1039 Coils Coil 44 65 - -
Cco01g0854 1039 Gene3D - 169 1012 - -
Cco01g0854 1039 SUPERFAMILY Calcium ATPase, transmembrane domain M 118 1017 IPR023298 -
Cco01g0854 1039 Gene3D - 137 337 - -
Cco01g0854 1039 SMART Cation_ATPase_N_a_2 117 191 IPR004014 -
Cco01g0854 1039 Gene3D - 464 659 IPR023299 GO:0000166(InterPro)
Cco01g0854 1039 NCBIfam HAD-IC family P-type ATPase 206 518 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco01g0854 1039 NCBIfam HAD-IC family P-type ATPase 551 700 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco01g0854 1039 NCBIfam HAD-IC family P-type ATPase 725 843 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco01g0854 1039 Pfam Cation transporting ATPase, C-terminus 840 1012 IPR006068 -
Cco01g0854 1039 CDD P-type_ATPase_Ca_PMCA-like 146 888 - -
Cco01g0854 1039 Gene3D - 451 800 IPR023214 -
Cco01g0854 1039 Pfam haloacid dehalogenase-like hydrolase 632 769 - -
Cco01g0854 1039 SFLD p-type atpase 436 807 IPR044492 -
Cco01g0854 1039 FunFam Calcium-transporting ATPase 772 1018 - -
Cco01g0854 1039 FunFam Calcium-transporting ATPase 20 80 - -
Cco01g0854 1039 FunFam Calcium-transporting ATPase 216 337 - -
Cco01g0854 1039 Pfam Ca2+-ATPase N terminal autoinhibitory domain 9 53 IPR024750 GO:0005516(InterPro)
Cco01g0854 1039 Gene3D - 20 81 - -
Cco01g0854 1039 Pfam Cation transport ATPase (P-type) 514 594 - -
Cco01g0854 1039 Pfam E1-E2 ATPase 240 433 - -
Cco01g0854 1039 SUPERFAMILY HAD-like 453 860 IPR036412 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0854 Cco-Chr1:9091181 Cco10g1561 Cco-Chr10:28801858 0.00E+00 dispersed
Cco01g0854 Cco-Chr1:9091181 Cco05g2319 Cco-Chr5:31780376 0.00E+00 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0854 K01537 - csv:101203529 1904.03