Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0857 ATGGCGCGAGGTAGAAAGCGGCGCCGACCGGAGACTGTTACGGAGGGTCGGGAAACTGAAGGGAACCTCGATAATACTGAAACCAAGCCCCGGGTTGGCCATGGAGGGACTGAAGTTGGAGTAATTGACAAGGGTTTTTTGGGCGACGGCGTAAACGAGGTGCAATGGGGGGCGAGGACAGAAGAGGGGGATGGAGGATTGGTTTCGGAAAGTAAACACGGCGAAACCCTGCTGCGGAATGAAGGGGAGGACAATGGTGAAGAGCAGAAGGGTTCTGTTACTGGGAAAAACGGCGAATTAGAATGTGAGGTTTCTATCAGAAGTCCGACGAGGAGTTTGAGAAAGAAGGCGAGAGTTTCGTACAACGAGGAGGTTTACGAGTTTGATGAGGATGATGATGAAGAGGAGATTCCTGTCAAGAAGCCTGGGCGAAGGGGTAGGAAAAAGAAAGTGTTTTCTTCGAATCGGAATGTATCTAGCGTGGAAGAAAAATGGAGTCCTGCGAATGAAGAAGATGATGTTAGGGAGAAAAAATCTGGTGTTTCTGGAAATAGGAGAGGTTCTTATAGAAGGAAACGTGGTGGAAGATATGCGCTAAGAAAGCAAAGTGTTGTTAAGCCGGAGGGCGAGAAGAAAGTTAATAAGTTTGATCCTGAATTCATCGCGGAGATATCTTTAATGTGCCATCAGTGCCAGAGGAATGATAAAGGCCGTGTGGTACGTTGTACTAATTGTAGGAGGAAGCGATATTGTATCCCTTGTTTGCAGAATTGGTACCCTCATACATCAGAAGAGGCAATTGCAGAATCTTGCCCGGTTTGCTCTGGGAATTGCAATTGTAAAGCATGTTTGCGTTTAGATGTTCCTGTTAAAAATTTGAAGAACATGGTACCAGTAGTCACAGAAGACAGCAAGGTTGAGCATGCAAAATATGTACTACGTAAACTTTTACCATTTCTAAAATGGCTAAATGAAGAACAGATGTTGGAGAAAAAACAAGAGGCTACAAGGCTAGCTTTGCCTCTTCATGATCTAAAGGTGGAGAAGGTAGATTGTGAAGACAATGAGCGAATGTACTGCGACATCTGCAGAACATCAATTTTTGATTTTCATCGAACGTGCGTTTCTTGTTCTTTTGACCTTTGTATCAACTGTTGCCGGGAAATCCGTGCAGGAGATATGCGGTGTTGTGAGAAAAAAAAGATAATACCATATATTAATCGAGGGTTTGAGTACTTGCATGGTGAAGGGCTGAAAAAAGTAAAAAGAGAAAAAGCCAAAGCGCTTGCTGAGTCTTGTCCTAGAGATGATGAGGAATTAGCATTCATATGGAGAGCGGAAAAAGATGGAAGGATTCCTTGTCCACCATCCAACTTGGGTGGTTGTGGTAATGGTTTTCTAGAGTTAAGATGTATATTGGAAGATTCAATCTCTAAATTGGTGGATGAGGGTGAGGAAATTGCTAGAACCCACAAGATAATGGATGTGGATGAAACTGCAGGAAAGTGGTGCTCATGCTTTAACTCGGCTGGTGAAGTTAATCTTGAGAGTGGTATGTTGAAGAAAGCTGCTTCCAGACAAGGTTCAAGTGATAATTATTTATATTGTCCTAGGGGCAGGGATATTCAACCTGGCCAGATAGAGCATTTTCAGTGGCATTGGAGCAAAGGTGAGCCGGTGGTTGTTAGCAATGTTCTTGAAACTACATCAGGTTTGAGCTGGGAACCCCTTGTCATGTGGCGTGCCTTCCGTCAAATTACGCATACAAAACATGGTCAACAGTTGGAAGTTAAGGCCATTGATTGCTTAGATTGGTGTGAGCTTGATGTCAATATCCACAAATTCTTTACCGGTTATACAGATGGTCAGTTTGATGCAAAATTGTGGCCTCGGATTCTTAAACTCAAGGACTGGCCTCCATCTAATCATTTTGAGAAATGCTTGCCCCGTCATAATGCTGAATTTATCAGTTGCTTACCTTTTAAGGAATATACACATCCTTCTAAAGGCGACCTAAATCTTGCTGTTAAATTGCCGGAAAAATCTCTAAAACCTGATATGGGACCTAAGACATATATTGCTTATGGAGTTGCACAGGAGCTTGGTCGTGGGGATTCTGTTACCAAGCTTCACTGTGATATGTCTGATGCAGTAAATGTTCTTACTCATGCTACCAATGTCACACTTGAGCCCGAGCATTTACATAGTATTAAAGAATTAAAAGCAAAACATCTTGCACACGACCAGGAAGAAATTTATGGTGCTATGACCGATACTGATATTGTCGATGGAAGCAAGTTTTGCAATGACCCCTGTAGCATGACTGAAAATGGAAAGGAACATGTTTGTGAAGTTGGTCATCAAAACAATGATGAGGTCTTGGAGGATGCATCTAACCCTAAAAGAGGCGATGAGGAAGAGGGCGATCTTCGAAATTTGAATGAACACAATGGAACTGAGCCTGATGAGTCTGTAAAGGTGAATCTAGCTGAAGAAACTTGTAGTGAAGCAAAAATATCAGAACAAATGGAAAGTTTGGAGGCGTCTGATGGTGGTGCACTGTGGGACATTTTTCGTAGGCAAGACGTCCCCCTACTGCAGCAATATCTGAACAAGCATTTCAGAGAATTTAGGCACATTCATGCCGGTCCTGTTCCACAGGTGTTTCATCCCGTGCATGATCAGTCATTTTATTTGACTTTGGAACACAAAAGAAAGCTCAAGGAGGAATATGGAATTGAACCTTGGACATTTGTCCAAAATCTGGGAGATGCTGTCTTTATTCCTGCTGGGTGTCCTCATCAAGTCAGAAACTTAAAGTCATGCATAAAGGTTGCTCTGGACTTTGTGTCACCTGAGAATGTTGGAGAGTGCATCCACTTGACTGAAGAATTTCGTAGGCTTCCTTCAAATCATTGGGCTAAGGAGGACAAGTTGGAGATCAAGAAAATGAGTGTTTATGCTATGAAAGCGACAATTGCTTGTTTGAAGGGAGAGAGCAACCTCAGGGGTGATCCTGTGACCAGAAGAGACTCTGCACAAGAGCAAATCGGACTCGAGCGTCAGGAGCCAAGATCAAAGCTGCAGAATTCTTCAGGTATGTATGATATGAATGATTGA 3120 43.04 MARGRKRRRPETVTEGRETEGNLDNTETKPRVGHGGTEVGVIDKGFLGDGVNEVQWGARTEEGDGGLVSESKHGETLLRNEGEDNGEEQKGSVTGKNGELECEVSIRSPTRSLRKKARVSYNEEVYEFDEDDDEEEIPVKKPGRRGRKKKVFSSNRNVSSVEEKWSPANEEDDVREKKSGVSGNRRGSYRRKRGGRYALRKQSVVKPEGEKKVNKFDPEFIAEISLMCHQCQRNDKGRVVRCTNCRRKRYCIPCLQNWYPHTSEEAIAESCPVCSGNCNCKACLRLDVPVKNLKNMVPVVTEDSKVEHAKYVLRKLLPFLKWLNEEQMLEKKQEATRLALPLHDLKVEKVDCEDNERMYCDICRTSIFDFHRTCVSCSFDLCINCCREIRAGDMRCCEKKKIIPYINRGFEYLHGEGLKKVKREKAKALAESCPRDDEELAFIWRAEKDGRIPCPPSNLGGCGNGFLELRCILEDSISKLVDEGEEIARTHKIMDVDETAGKWCSCFNSAGEVNLESGMLKKAASRQGSSDNYLYCPRGRDIQPGQIEHFQWHWSKGEPVVVSNVLETTSGLSWEPLVMWRAFRQITHTKHGQQLEVKAIDCLDWCELDVNIHKFFTGYTDGQFDAKLWPRILKLKDWPPSNHFEKCLPRHNAEFISCLPFKEYTHPSKGDLNLAVKLPEKSLKPDMGPKTYIAYGVAQELGRGDSVTKLHCDMSDAVNVLTHATNVTLEPEHLHSIKELKAKHLAHDQEEIYGAMTDTDIVDGSKFCNDPCSMTENGKEHVCEVGHQNNDEVLEDASNPKRGDEEEGDLRNLNEHNGTEPDESVKVNLAEETCSEAKISEQMESLEASDGGALWDIFRRQDVPLLQQYLNKHFREFRHIHAGPVPQVFHPVHDQSFYLTLEHKRKLKEEYGIEPWTFVQNLGDAVFIPAGCPHQVRNLKSCIKVALDFVSPENVGECIHLTEEFRRLPSNHWAKEDKLEIKKMSVYAMKATIACLKGESNLRGDPVTRRDSAQEQIGLERQEPRSKLQNSSGMYDMND 1039
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9153038 9162615 + CcPI632755_01g008570.1 Cco01g0857 169719

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0857 1039 MobiDBLite consensus disorder prediction 789 826 - -
Cco01g0857 1039 MobiDBLite consensus disorder prediction 65 90 - -
Cco01g0857 1039 ProSiteProfiles JmjC domain profile. 667 966 IPR003347 -
Cco01g0857 1039 MobiDBLite consensus disorder prediction 1004 1022 - -
Cco01g0857 1039 MobiDBLite consensus disorder prediction 1 44 - -
Cco01g0857 1039 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 79 997 IPR045109 GO:0000118(PANTHER)|GO:0000785(PANTHER)|GO:0003712(PANTHER)|GO:0006357(PANTHER)|GO:0031490(PANTHER)|GO:0032454(InterPro)|GO:0032454(PANTHER)
Cco01g0857 1039 Pfam JmjC domain, hydroxylase 852 949 IPR003347 -
Cco01g0857 1039 MobiDBLite consensus disorder prediction 7 27 - -
Cco01g0857 1039 Gene3D Cupin 536 974 - -
Cco01g0857 1039 SMART cupin_9 648 966 IPR003347 -
Cco01g0857 1039 MobiDBLite consensus disorder prediction 57 98 - -
Cco01g0857 1039 MobiDBLite consensus disorder prediction 127 193 - -
Cco01g0857 1039 MobiDBLite consensus disorder prediction 1023 1039 - -
Cco01g0857 1039 MobiDBLite consensus disorder prediction 165 183 - -
Cco01g0857 1039 MobiDBLite consensus disorder prediction 1004 1039 - -
Cco01g0857 1039 SUPERFAMILY Clavaminate synthase-like 546 986 - -
Cco01g0857 1039 ProSiteProfiles Zinc finger RING-type profile. 228 275 IPR001841 -
Cco01g0857 1039 CDD cupin_RmlC-like 879 950 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0857 K15601 - - csv:101221956 1741.09
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0857 Cco-Chr1:9153038 Cco04g2031 Cco-Chr4:34368506 1.50E-127 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g683 . . . . . . . . . . . . . . . . . . . . . . . . Cla01g00805 Cam01g0827 Cec01g0825 Cco01g0857 Clacu01g0820 Cmu01g0788 Cre09g1717 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005729 2 1 1 2 2 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 2 3 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58600 PF02373 JmjC 2.90E-13 CL0029 Cco TR