Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0861 ATGTCTGGTTCTGATGGCGTCAACAACAACAATGGCGCCATAATCGACCATTCTCAACAACAGAGACATCATCAACAACAACAGCAGCAGCAACTACAGGGGAATCAGTCTAACAACAATGGTACTTTGGCCGTCAAAAAACCTCCCTCCAAGGACCGCCACAGCAAGGTCGACGGCCGTGGCCGCCGTATTCGTATGCCCATCGTTTGCGCCGCTCGCGTTTTCCAACTCACCCGCGAATTAGGCCACAAATCCGACGGCCAGACTATCGAATGGCTCCTTCGTCAAGCAGAGCCGTCGATTATCGCCGCCACTGGCACCGGCACCACTCCGGCTAGCTTCTCCACCATCTCCGCCTCACTCCGAGGCGCTCCTGCCGCTGCTTCCTCTTCTTCTTCCTCGCTCGACCATAAACCCCTTTTGGCTCCGGCGCCCTTCATTTTAGGCAAACGCGTCAGAACCGACGACGATGGAGCTAATAAAGACGACGCCGGTGGTATTTCGGTCGGTCCCACTATTGGTTCGATTATGGGTCCGGCTGCAGCAGGTGGGTACTGGGCGATTCCCGCGAGGTCGGATTTCGGACAGGTGTGGAGCTTTGCAGCGGCGGCGCCGGAGATGGTGATTCAACCAACCGCCGTTTCCCACCAGGCGTCGCTGTTCGTTCAGCAGCAATCGATGGGAGAGGCGTCGGCGGCGAAAGTGGGAAATTACCTTCCGGGGCATCTGAATTTGCTTGCTTCTTTATCAGGTGGACCGGGAAGTTCCGTCCGAAGAGACAACGACCACCGTTAA 795 56.6 MSGSDGVNNNNGAIIDHSQQQRHHQQQQQQQLQGNQSNNNGTLAVKKPPSKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTISASLRGAPAAASSSSSSLDHKPLLAPAPFILGKRVRTDDDGANKDDAGGISVGPTIGSIMGPAAAGGYWAIPARSDFGQVWSFAAAAPEMVIQPTAVSHQASLFVQQQSMGEASAAKVGNYLPGHLNLLASLSGGPGSSVRRDNDHR 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9212046 9212840 + CcPI632755_01g008610.1 Cco01g0861 169723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0861 264 MobiDBLite consensus disorder prediction 1 45 - -
Cco01g0861 264 MobiDBLite consensus disorder prediction 47 63 - -
Cco01g0861 264 MobiDBLite consensus disorder prediction 1 63 - -
Cco01g0861 264 ProSiteProfiles TCP domain profile. 50 104 IPR017887 -
Cco01g0861 264 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 20 190 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0042752(PANTHER)|GO:0043565(PANTHER)
Cco01g0861 264 Pfam TCP family transcription factor 50 131 IPR017887 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0861 Cco-Chr1:9212046 Cco02g1531 Cco-Chr2:27943749 3.40E-76 dispersed
Cco01g0861 Cco-Chr1:9212046 Cco06g1829 Cco-Chr6:28593417 2.00E-28 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58601 PF03634 TCP 7.10E-32 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0861 K16221 - csv:101214586 391.734