Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0865 ATGATGCCCATTTTGGACCACCACCATGATCATAATAACCAGCCCCTCCTCCTCCCCGCCGATGATCTCGCCGCCGCTGTCCCCGCCCCCGCCTTCCATCGCAAGAAACGGATGCCTAGAAACCGCCGCCGCTCTTCTTCTAATCTTCCCTTCTTTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAAATAACACTCCCCATCTCCCTCCTCCCCGGGTAATTGATCCAAGGAACCTGAAGTTTCTTTTCCAGAAGGAGCTTAAGAACAGTGATGTTAGCTCTCTGAGGAGAATGATACTACCAAAGAAAGCAGCTGAAACTCACCTTCCAGCTTTGGAGTCTAAAGAAGGAATTATAATCACCATGGATGACTTGGATGGGGTGCATGTTTGGAACTTCAAATATAGGTTTTGGCCAAATAACAATAGTAGAATGTATGTACTTGAAAATACTGGAGACTTTGTCAATGCCCATGGCTTACATCTAGGAGATTTCATCATGGTTTACCAAGATTGTGAAGAACATAACTATGTGATTCAAGCAAAAAAGGCTTGCGAGCAAGAAATATATTCCGACATAGCAACCAACGTCGTGATCAACGACGACATTGTGTTTCAAGACTACGATGCTAGCAAAGCGGCCAGCTCCATATACGTGCCTAGTCCAACCATGGAAGATCCTGTGTCATCATTCATCTATGACACTAGTTCTGCCTTCGACAACGATTCGCCTTTCGACTTTATGAGTGGATCAATGACCAACTACTCAAGAATGGGAGGCCTCGAAGGCTTTGGATCGGTCGAGAACTTGTCTCTCGACGACTTCTACTAA 834 45.32 MMPILDHHHDHNNQPLLLPADDLAAAVPAPAFHRKKRMPRNRRRSSSNLPFFPSSSSSSSSSSNNTPHLPPPRVIDPRNLKFLFQKELKNSDVSSLRRMILPKKAAETHLPALESKEGIIITMDDLDGVHVWNFKYRFWPNNNSRMYVLENTGDFVNAHGLHLGDFIMVYQDCEEHNYVIQAKKACEQEIYSDIATNVVINDDIVFQDYDASKAASSIYVPSPTMEDPVSSFIYDTSSAFDNDSPFDFMSGSMTNYSRMGGLEGFGSVENLSLDDFY 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9272497 9275887 - CcPI632755_01g008650.1 Cco01g0865 169727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0865 277 CDD B3_DNA 82 184 IPR003340 GO:0003677(InterPro)
Cco01g0865 277 ProSiteProfiles B3 DNA-binding domain profile. 84 186 IPR003340 GO:0003677(InterPro)
Cco01g0865 277 FunFam B3 domain-containing transcription factor FUS3 80 194 - -
Cco01g0865 277 Gene3D - 80 197 IPR015300 -
Cco01g0865 277 SMART B3_2 84 186 IPR003340 GO:0003677(InterPro)
Cco01g0865 277 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 36 185 IPR044800 GO:0003700(InterPro)
Cco01g0865 277 MobiDBLite consensus disorder prediction 31 74 - -
Cco01g0865 277 Pfam B3 DNA binding domain 84 181 IPR003340 GO:0003677(InterPro)
Cco01g0865 277 SUPERFAMILY DNA-binding pseudobarrel domain 82 185 IPR015300 -
Cco01g0865 277 MobiDBLite consensus disorder prediction 44 69 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0865 Cco-Chr1:9272497 Cco09g0909 Cco-Chr9:8540643 2.20E-33 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58603 PF02362 B3 2.00E-17 CL0405 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0865 K09287 - csv:101222512 410.994