Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0869 ATGGGAGAGCGCGGTGGGGTTGTGAGTGATTGCGTTGGGTTTAGGCAGCGGAGGAATCTTCTTAATCATTGGGGAAAGCTTGATATGAAGCTTTCAACATCAGGGTTTGGTCAGCAGGATCACGAAGGAGGGGAAAAGAAATGCTTGAATTCAGAGCTATGGCATGCATGCGCGGGGCCCCTTGTGTCCCTCCCAACTGCTGGGACTCGGGTTGTCTACTTCCCTCAGGGTCACAGCGAACAGGTTGCTGCCACGACCAATAAAGAAGTTGATGGGCACATACCCAATTACCCGAACCTACCTCCCCAGTTGATATGTCAACTTCACAACGTTACAATGCATGCAGATGTGGAAACGGATGAAGTATATGCCCAGATGACATTACAGCCTCTGACTGCACAAGAGCAAAAGGATACATTTCTACCCATGGAATTGGGGATTCCTAGTAGACAGCCAACAAATTACTTTTGCAAAACGTTGACAGCAAGTGATACAAGCACCCATGGAGGATTTTCTGTACCTCGTCGTGCTGCTGAGAAAGTTTTTCCTCCACTGGATTTTTCACAACAGCCACCAGCACAAGAGCTGATTGCAAGGGACCTTCATGATGTCGAATGGAAGTTTAGGCATATTTTTCGAGAGAATAAGATTGTTTGCTTGGTTGGTCTCTGGCATGCTTTCCTGGTTGATGAGACATGGGAAGGTTGGGTCGAAGTTGGGAAGGGGCAGATATGCAACTTTGAAAATGTGTTTGTTGGGTGGATGGGAGGCCAAGAACAGAAGTTTCTTGCAAGGTGGTTTTGGAGATTCTATGTGGCAAAGACAGTCTGTGGAGGTATTTCATTGCAATGCCACATCCCATTTTGGTACTCTTGGGCAACTTTGGACTTAAAGTATCCAGGGCCTGAAGCTACGTTATGTAGCAGGAAGATTGATCTATGGTTGGGAGGATGTCTTATTTTCCCTCCTTGTACTCTTTACTTAATGAAAAGACAGCCAAAACGACACCTTCTTACAACTGGTTGGAGTGTGTTCGTTAGTGCCAAAAGATTGGTTGCTGGGGATTCTGTACTTTTTATATGGAATGAAAAAAATCAGCTTCTTTTGGGTATACGCCGTGCCACAAGACCACAAACTGTGATGCCCTCTTCTGTTTTGTCAAGTGATAGCATGCACATTGGACTCCTTGCTGCTGCAGCTCATGCTGCTGCAACGAATAGCTGTTTCACAGTGTTCTACAACCCCAGGGCTAGCCCATCAGAGTTTGTCATCCCTCTGACAAAATATGTTAAAGCTGTATTTCATACCCGTGTTTCAGTAGGAATGCGTTTTCGGATGCTTTTTGAGACTGAAGAGTCAAGCGTTCGAAGGTACATGGGTACTATAACTGGAATAAGTGATCTTGACCCTGTTCGCTGGCCGAATTCTCATTGGCGTTCTGTCAAGGTAGGGTGGGATGAGTCAACAGCTGGGGAGAGGCAGCCAAGGGTATCGTTGTGGGAAATTGAGCCTTTGACTACATTTCCTATGTATCCGTCTCTGTTTCCACTTAGACTGAAACGTCCATGGCATCCTGGAGTCTCTTCTGTTCATGATAACAGAGATGATGCATCTAATGGATTAATGTGGCTTCGGGGAGGAGTTGGGGAACAGGGTCTACACTCACTGAATTTGCAATCTGTGGGCCCCCTGCCCTGGTTGCAGCAGAGACTTGACTCTTCCATGTTTGGCAATGATCATAACCAACAGTATCAAGCCATGTTGGCAGCTGGAATGCCAAACCTTGGAGGTGTTGATATGCTCAGACAGCAAATTATGCATCTTCAACAACCTTTCCAATATATTCAACAGGCAGGCTTCCATAACTCTCTGTTGCAGATGCAACAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAATTGGTTCAACAATCTATGCCTCAGAACATCCTGCAGGCACCAAACCAAGTTTTGGCAGAAAATCTACCTCAACACATTCTCCAGCAAACTCTACAAAATCAACCTGAGGATCTGCCAAACCAGCAACAGCATACTTATCATGATTCCATTCAAGTTCAAAGCAATCAATTTCATCAGGGTGGGCATTCAAATGTGCCATCACCCACATTTCCCAGAACAGACCTTATGGATTCCAACACAAATTACTCAGATTCCATTACCTCTAGAAGGAATATACTTGCTTCATCATGTGCTGAAGGGACGGGAAATCTTTCCAATATCTACAGAAGTGGGCAGTCAATCCTAACTGAGCATTTACCTCAACAATCTCCTGTTTCTAAGAATGCTCATTCACAGGTTGATGCTCACTCAAACTCAATGTCATTTCCTCCATTTTCTGGTAGAGACTCAATTCTGGAGCTGGGAAATTGTAATTCAGATTCTCCAAGTCCTACACTTTTTGGTGTAAATATTGATTCATCTGGACTTCTACTTCCCTCTAATGTGCCCACTTACGCTTCTCCATCAATTGGTCCTGATTCATCCTCAATGCCCCTGGGAGATTCTGGATTTCAGAATTCTCTGTACAGTTGTGTCCAAGACTCTTCTGAGTTGTTGCACAACTCAGGGCAAGTTGATCCATCGAATCCAACTCGGACATTTGTTAAGGTTTACAAATCTGGATCTGTTGGGCGCTCACTAGACATCTCCCGGTTCAGCAGCTATCAGGAGCTGCGAGAGGAGCTGGCTCAGATGTTTGGAATCGAGGGACAGTTGGAAGACCCTCATAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAATGATGTACTTCTCCTTGGAGATGACCCTTGGGAGGCATTTGTGAATAATGTCGGGTATATCAAGATACTTTCTCCCCAGGACTTTCAGAAACTAGGGGAACAGGCAATCGAGTCCTTTAACCCTATCGTTGGTCAGCGACTTACCAGTGGTGGCAATGAAGCTGGAAATGTTTCAGGATTACCATCTGTTGGTTCGCTAGAATATTGA 2991 45.47 MGERGGVVSDCVGFRQRRNLLNHWGKLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNKEVDGHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTAQEQKDTFLPMELGIPSRQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRENKIVCLVGLWHAFLVDETWEGWVEVGKGQICNFENVFVGWMGGQEQKFLARWFWRFYVAKTVCGGISLQCHIPFWYSWATLDLKYPGPEATLCSRKIDLWLGGCLIFPPCTLYLMKRQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRATRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGVSSVHDNRDDASNGLMWLRGGVGEQGLHSLNLQSVGPLPWLQQRLDSSMFGNDHNQQYQAMLAAGMPNLGGVDMLRQQIMHLQQPFQYIQQAGFHNSLLQMQQQQQQQQQQQQLVQQSMPQNILQAPNQVLAENLPQHILQQTLQNQPEDLPNQQQHTYHDSIQVQSNQFHQGGHSNVPSPTFPRTDLMDSNTNYSDSITSRRNILASSCAEGTGNLSNIYRSGQSILTEHLPQQSPVSKNAHSQVDAHSNSMSFPPFSGRDSILELGNCNSDSPSPTLFGVNIDSSGLLLPSNVPTYASPSIGPDSSSMPLGDSGFQNSLYSCVQDSSELLHNSGQVDPSNPTRTFVKVYKSGSVGRSLDISRFSSYQELREELAQMFGIEGQLEDPHRSGWQLVFVDRENDVLLLGDDPWEAFVNNVGYIKILSPQDFQKLGEQAIESFNPIVGQRLTSGGNEAGNVSGLPSVGSLEY 996
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9308855 9333946 - CcPI632755_01g008690.1 Cco01g0869 169731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0869 996 ProSiteProfiles B3 DNA-binding domain profile. 329 375 IPR003340 GO:0003677(InterPro)
Cco01g0869 996 SUPERFAMILY CAD & PB1 domains 864 945 - -
Cco01g0869 996 SUPERFAMILY DNA-binding pseudobarrel domain 332 402 IPR015300 -
Cco01g0869 996 FunFam Auxin response factor 866 960 - -
Cco01g0869 996 Gene3D - 867 960 - -
Cco01g0869 996 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 48 962 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cco01g0869 996 CDD B3_DNA 327 373 IPR003340 GO:0003677(InterPro)
Cco01g0869 996 MobiDBLite consensus disorder prediction 696 721 - -
Cco01g0869 996 Gene3D - 154 238 IPR015300 -
Cco01g0869 996 Gene3D - 324 375 IPR015300 -
Cco01g0869 996 FunFam Auxin response factor 437 509 - -
Cco01g0869 996 Pfam AUX/IAA family 866 957 IPR033389 -
Cco01g0869 996 Pfam B3 DNA binding domain 327 374 IPR003340 GO:0003677(InterPro)
Cco01g0869 996 Pfam B3 DNA binding domain 156 230 IPR003340 GO:0003677(InterPro)
Cco01g0869 996 SMART B3_2 271 375 IPR003340 GO:0003677(InterPro)
Cco01g0869 996 SMART B3_2 156 258 IPR003340 GO:0003677(InterPro)
Cco01g0869 996 Pfam Auxin response factor 399 481 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cco01g0869 996 Gene3D - 437 509 - -
Cco01g0869 996 CDD B3_DNA 155 248 IPR003340 GO:0003677(InterPro)
Cco01g0869 996 SUPERFAMILY DNA-binding pseudobarrel domain 140 216 IPR015300 -
Cco01g0869 996 ProSiteProfiles PB1 domain profile. 871 955 IPR053793 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0869 Cco-Chr1:9308855 Cco03g0798 Cco-Chr3:8515924 2.60E-246 dispersed
Cco01g0869 Cco-Chr1:9308855 Cco04g2271 Cco-Chr4:36246732 3.60E-256 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58605 PF02309 AUX_IAA 3.70E-08 CL0072 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0869 K14486 - csv:101208098 1269.99