Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0893 ATGTCGCCATCTCTTCCACTTCACTTCCTCTTCACTGTTGCAGCAGCTCTCACATCTCCGGTCACCTCCCATTTCTCTTCTACAACCTCCTCACCGTCGCCGGAATCCGCCCCGTCGCTCTCCGAGTGGAGATCTGCTCGTGCCACCTACTACGCCGCCTCCGACCCTCGCGATGCGGTGGGCGGAGCCTGTGGATATGGCGATTTAGCGAAGGCAGGCTATGGCATGGCGACAGTGGGACTCAGCGAGTCGCTATTTGAACGCGGACAGATCTGCGGTGCCTGCTTTCAGCTCCGGTGTGTTGAGGACCTCCGGTGGTGTATTCCCGGTACCTCTATCATTGTCACTGTTACTAATTTCTGTGCGCCTAATTATGGCTTCACAGCTGAGGGCGGTGGGCATTGTAACCCTCCTAATAAGCATTTTGTGCTCCCTATTGAGGCGTTTGAGAAGATCGCTATCTGGAAGGCGGGAAACATGCCTGTTCAGTATCGGAGGATCAAATGCCGAAAGGAAGGGGGTATTCGATATACGGTTTCTGGGTATGGCATCTACCTCTCAGTGTTGATAAGTAATGTTGCAGGCGCTGGAGATGTGAGTGCTGTAAAGATCAAGGGGTCGAGAACCGGTTGGCTTCCAATGGGTCGTAATTGGGGGCAAAACTGGCACATAAATGCTGATTTGAACCATCAAGCCCTTTCCTTCGAAGTCACTAGCAGTGATGGAGTAACAATTACATCCTACAATGTTGCTCCCAAGGATTGGAACTTTGGGCAGACTTTTGAAGCCGAAGGGTAA 798 52.13 MSPSLPLHFLFTVAAALTSPVTSHFSSTTSSPSPESAPSLSEWRSARATYYAASDPRDAVGGACGYGDLAKAGYGMATVGLSESLFERGQICGACFQLRCVEDLRWCIPGTSIIVTVTNFCAPNYGFTAEGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRIKCRKEGGIRYTVSGYGIYLSVLISNVAGAGDVSAVKIKGSRTGWLPMGRNWGQNWHINADLNHQALSFEVTSSDGVTITSYNVAPKDWNFGQTFEAEG 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9852810 9857226 - CcPI632755_01g008930.1 Cco01g0893 169755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0893 265 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576(InterPro)
Cco01g0893 265 PRINTS Expansin/Lol pI family signature 42 57 IPR007118 GO:0005576(InterPro)
Cco01g0893 265 PRINTS Expansin/Lol pI family signature 249 263 IPR007118 GO:0005576(InterPro)
Cco01g0893 265 PRINTS Expansin/Lol pI family signature 157 173 IPR007118 GO:0005576(InterPro)
Cco01g0893 265 PRINTS Expansin/Lol pI family signature 211 225 IPR007118 GO:0005576(InterPro)
Cco01g0893 265 PRINTS Expansin/Lol pI family signature 82 100 IPR007118 GO:0005576(InterPro)
Cco01g0893 265 PRINTS Expansin signature 100 111 IPR002963 GO:0009664(InterPro)
Cco01g0893 265 PRINTS Expansin signature 220 241 IPR002963 GO:0009664(InterPro)
Cco01g0893 265 PRINTS Expansin signature 132 149 IPR002963 GO:0009664(InterPro)
Cco01g0893 265 PRINTS Expansin signature 149 162 IPR002963 GO:0009664(InterPro)
Cco01g0893 265 PRINTS Expansin signature 249 265 IPR002963 GO:0009664(InterPro)
Cco01g0893 265 PRINTS Expansin signature 73 87 IPR002963 GO:0009664(InterPro)
Cco01g0893 265 PRINTS Expansin signature 185 206 IPR002963 GO:0009664(InterPro)
Cco01g0893 265 PRINTS Expansin signature 113 123 IPR002963 GO:0009664(InterPro)
Cco01g0893 265 PRINTS Expansin signature 173 185 IPR002963 GO:0009664(InterPro)
Cco01g0893 265 Pfam Lytic transglycolase 79 164 IPR009009 -
Cco01g0893 265 Gene3D - 175 264 IPR036749 -
Cco01g0893 265 SMART dpbb_1 78 164 IPR007112 -
Cco01g0893 265 Pfam Expansin C-terminal domain 175 252 IPR007117 -
Cco01g0893 265 CDD DPBB_EXPA_N 42 169 - -
Cco01g0893 265 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 61 174 IPR007112 -
Cco01g0893 265 Gene3D - 27 170 IPR036908 -
Cco01g0893 265 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 184 263 IPR007117 -
Cco01g0893 265 SUPERFAMILY PHL pollen allergen 171 262 IPR036749 -
Cco01g0893 265 PANTHER EXPANSIN-A15 20 263 IPR002963 GO:0009664(InterPro)
Cco01g0893 265 SUPERFAMILY Barwin-like endoglucanases 42 192 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0893 Cco-Chr1:9852810 Cco02g2145 Cco-Chr2:34230991 3.00E-72 dispersed
Cco01g0893 Cco-Chr1:9852810 Cco03g0148 Cco-Chr3:1469472 7.00E-74 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0893 - - - 0.0