Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0897 ATGGCTTTCCAGAAGATCAAGGTCGCCAATCCCATCGTTGAGATGGACGGAGATGAAATGACTCGAGTTATCTGGGAATCAATTAAGAATAAGCTCATTTTCCCCTTCTTGGAATTGGATATCAAGTATTTTGACCTCGGCCTTCCACACCGTGATGCCACAGATGATAAAGTTACAATTGAAAGTGCAGAAGCTACTTTAAAGTACAATGTAGCAATCAAATGTGCAACAATCACTCCAGATGAAGCACGTGTTAAGGAATTTGGCTTGAAGCAGATGTGGAGAAGTCCGAATGGGACAATCAGGAATATTCTGAATGGTACTGTTTTCAGAGAACCAATTCTTTGCAAAAATGTTCCTCGCCTTGTACCAGGTTGGACGAAGCCTATCTGTATTGGAAGACATGCTTTTGGTGATCAATACAGAGCTACTGATACAGTTATTAAAGGACCTGGAAAATTGAAATTAGTTTTTGAGGGGCAAGAGACGCAAGAGATAGAGGTTTTCAATTTTACTGGTGCTGGAGGAGTAGCATTAGCCATGTATAACACTGATGAGTCCATCCGCTCCTTTGCTGAGGCATCAATGAACACTGCTTATGAGAAGAAATGGCCTCTTTACCTAAGCACAAAAAATACTATTCTAAAGAAATACGATGGAAGATTCAAGGATATATTCCAAGAAGTCTATGAATCCCAGTGGAAATCAAAGTTTGAGGCTGCTGGCATATGGTATGAACACCGTCTCATCGATGATATGGTGGCTTATGCACTTAAGAGTGAAGGAGGTTATGTCTGGGCATGCAAGAACTATGATGGAGATGTTCAGAGTGACTTCTTAGCTCAAGGATTCGGATCTCTTGGGTTGATGACTTCTGTATTGGTTTGCCCTGATGGAAAGACAATTGAAGCAGAAGCTGCTCATGGTACTGTTACACGGCATTTTAGGGTTCATCAAAAGGGAGGTGAAACCAGCACAAACAGTATTGCATCCATTTTTGCTTGGTCTCGTGGCCTTGCTCACAGGGCAAAACTAGATGACAATGCTAGTCTCTTAGAGTTCACTGAGAAACTAGAATCGGCTTGTATTAATACTGTGGAATCTGGGAAGATGACCAAGGATCTTGCTCTTATCCTTCATGGTCCCAAGCTTTCTCGTGAGCACTATCTGAATACTGAAGAGTTCATTGATGCTGTAGCTGAGGAACTAAAATCCAGACTCCTTAAGGCATAG 1233 41.77 MAFQKIKVANPIVEMDGDEMTRVIWESIKNKLIFPFLELDIKYFDLGLPHRDATDDKVTIESAEATLKYNVAIKCATITPDEARVKEFGLKQMWRSPNGTIRNILNGTVFREPILCKNVPRLVPGWTKPICIGRHAFGDQYRATDTVIKGPGKLKLVFEGQETQEIEVFNFTGAGGVALAMYNTDESIRSFAEASMNTAYEKKWPLYLSTKNTILKKYDGRFKDIFQEVYESQWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHFRVHQKGGETSTNSIASIFAWSRGLAHRAKLDDNASLLEFTEKLESACINTVESGKMTKDLALILHGPKLSREHYLNTEEFIDAVAEELKSRLLKA 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9919026 9923641 + CcPI632755_01g008970.1 Cco01g0897 169759

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0897 410 FunFam Isocitrate dehydrogenase [NADP] 3 410 - -
Cco01g0897 410 Pfam Isocitrate/isopropylmalate dehydrogenase 7 399 IPR024084 -
Cco01g0897 410 ProSitePatterns Isocitrate and isopropylmalate dehydrogenases signature. 270 289 IPR019818 GO:0000287(InterPro)|GO:0016616(InterPro)|GO:0051287(InterPro)
Cco01g0897 410 NCBIfam isocitrate dehydrogenase (NADP(+)) 4 407 IPR004790 GO:0004450(InterPro)|GO:0006102(InterPro)
Cco01g0897 410 Gene3D Isopropylmalate Dehydrogenase 3 410 - -
Cco01g0897 410 PIRSF IDH_NADP 1 410 IPR004790 GO:0004450(InterPro)|GO:0006102(InterPro)
Cco01g0897 410 PANTHER NADP-SPECIFIC ISOCITRATE DEHYDROGENASE 3 408 IPR004790 GO:0004450(InterPro)|GO:0004450(PANTHER)|GO:0005739(PANTHER)|GO:0006102(PANTHER)|GO:0006102(InterPro)|GO:0006739(PANTHER)
Cco01g0897 410 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 3 407 - -
Cco01g0897 410 SMART Iso_dh_2 11 399 IPR024084 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0897 K00031 - - csv:101211294 811.601
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0897 Cco-Chr1:9919026 Cco09g2121 Cco-Chr9:35620886 1.60E-197 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g717 . . . . . . . . . . . . . . . . . . . . . . . . Cla01g00846 Cam01g0871 Cec01g0869 Cco01g0897 Clacu01g0860 Cmu01g0828 Cre09g1682 . . . . . . . . . . . . Bpe14g00063 . . Bma02g00562 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001183 3 5 3 4 3 2 4 2 2 1 2 2 2 2 2 4 2 2 3 2 2 2 2 2 2 2 2 3 5 3 77