Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0900 ATGGTTCTCTCCAAGACTGCTTCTCAGACCGATGTCTCCGTCCACTCCACCTTCGCTTCTCGATATGTGCGAACCTCTCTCCCGAGATTCAAAATGCCGGAAAATTCGATTCCCAAGGAGGCTGCGTTTCAGATCATTAATGACGAACTCATGCTCGATGGAAACCCTAGGTTGAATTTGGCCTCCTTCGTCACTACTTGGATGGAGCCTGAGTGTGATAAACTCATCATGGCCGCCATTAACAAGAATTACGTCGATATGGATGAATATCCTGTCACTACAGAGCTTCAGGCGTGA 297 47.81 MVLSKTASQTDVSVHSTFASRYVRTSLPRFKMPENSIPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMAAINKNYVDMDEYPVTTELQA 98
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 9988502 9992211 + CcPI632755_01g009000.1 Cco01g0900 169762
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0900 98 FunFam Glutamate decarboxylase 1 65 - -
Cco01g0900 98 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 97 IPR002129 GO:0016830(InterPro)|GO:0019752(InterPro)|GO:0030170(InterPro)
Cco01g0900 98 PANTHER GLUTAMATE DECARBOXYLASE 1 97 IPR010107 GO:0004351(InterPro)|GO:0004351(PANTHER)|GO:0005829(PANTHER)|GO:0006536(InterPro)|GO:0006538(PANTHER)|GO:0030170(InterPro)
Cco01g0900 98 Gene3D - 1 65 - -
Cco01g0900 98 SUPERFAMILY PLP-dependent transferases 15 97 IPR015424 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0900 Cco-Chr1:9988502 Cco01g1862 Cco-Chr1:31156884 8.20E-36 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0900 K01580 - csv:101216119 193.741