Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco01g0900 | ATGGTTCTCTCCAAGACTGCTTCTCAGACCGATGTCTCCGTCCACTCCACCTTCGCTTCTCGATATGTGCGAACCTCTCTCCCGAGATTCAAAATGCCGGAAAATTCGATTCCCAAGGAGGCTGCGTTTCAGATCATTAATGACGAACTCATGCTCGATGGAAACCCTAGGTTGAATTTGGCCTCCTTCGTCACTACTTGGATGGAGCCTGAGTGTGATAAACTCATCATGGCCGCCATTAACAAGAATTACGTCGATATGGATGAATATCCTGTCACTACAGAGCTTCAGGCGTGA | 297 | 47.81 | MVLSKTASQTDVSVHSTFASRYVRTSLPRFKMPENSIPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMAAINKNYVDMDEYPVTTELQA | 98 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 9988502 | 9992211 | + | CcPI632755_01g009000.1 | Cco01g0900 | 169762 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco01g0900 | 98 | FunFam | Glutamate decarboxylase | 1 | 65 | - | - | |
| Cco01g0900 | 98 | Pfam | Pyridoxal-dependent decarboxylase conserved domain | 33 | 97 | IPR002129 | GO:0016830(InterPro)|GO:0019752(InterPro)|GO:0030170(InterPro) | |
| Cco01g0900 | 98 | PANTHER | GLUTAMATE DECARBOXYLASE | 1 | 97 | IPR010107 | GO:0004351(InterPro)|GO:0004351(PANTHER)|GO:0005829(PANTHER)|GO:0006536(InterPro)|GO:0006538(PANTHER)|GO:0030170(InterPro) | |
| Cco01g0900 | 98 | Gene3D | - | 1 | 65 | - | - | |
| Cco01g0900 | 98 | SUPERFAMILY | PLP-dependent transferases | 15 | 97 | IPR015424 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco01g0900 | Cco-Chr1:9988502 | Cco01g1862 | Cco-Chr1:31156884 | 8.20E-36 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco01g0900 | K01580 | - | csv:101216119 | 193.741 |