Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0901 ATGCAGAACCGATGTGTGAACATGATAGCTCATTTGTTCAATGCCCCATTGGGTGATTCTGAGACGGCAGTGGGAGTGGGAACAGTGGGATCGTCAGAGGCCATAATGTTGGCTGGTTTGGCTTTCAAGAGAAAGTGGCAGAACAGAAGGAAGGCTGAAGGAAAGCCCTATGACAAGCCCAACATTGTCACTGGAGCTAACGTCCAGGTATGCTGGGAGAAATTTGCAAGGTACTTTGAGGTAGAACTGAAGGAGGTGAAATTGAGGGAAGGTTATTATGTGATGGATCCAGAGAAAGCTGTGGAGTTGGTTGATGAAAACACCATCTGTGTTGCAGCCATCTTGGGTTCCACTCTCAATGGAGAATTCGAAGATGTAAAGCTCTTGAATGATCTCTTGATCGAGAAGAACAAAGAAACTGGATGGGATACTCCTATTCATGTTGATGCTGCTAGTGGAGGGTTTATTGCCCCATTCATTTACCCTGAGCTAGAATGGGACTTTAGGCTGCCCCTTGTAAAGAGTATTAATGTAAGTGGCCACAAGTATGGGCTTGTTTATGCTGGAATTGGTTGGGTTATCTGGAGGAACAAAGAAGATTTGCCTGAAGAACTCATCTTCCATATCAACTATCTTGGAGCGGACCAACCCACTTTCACCCTCAATTTCTCCAAAGGATCTAGCCAAGTCATTGCTCAGTATTACCAATTGATCCGCTTGGGTTATGAGGGATACCAAAACGTGATGGAAAACTGCAAAGAAAACATGATTGTTCTAAAGGAAGGACTCGAAAGAACAGGGCGATTCAACATCGTGTCGAAGGACAATGGAGTTCCACTTGTGGCCTTCTCCTTGAAAGACAACACACGCCATACAGAGTTTGAGGTCTCAGAAATGCTGAGGAGATTCGGGTGGATTGTACCAGCTTACACCATGCCTCCTGATGCACAACACATAACAGTCCTTAGAGTAGTGATCCGAGAAGACTTCTCTCGCACACTTGCTGAGCGTCTTGTGACGGATATTGAGAAAACGCTGCACGAGCTCGATAGCCTCCCGTCGAGGGCTGATATCAAAATGACGGTGGCCGGAGAAGAGACACAGAAGAACGACGTGGTGGTGGCGAAGAAGAGCGCGCTGGAGACACAGAGGGAGATCACAACTGTTTGGAGGAAGTTTGTGATGGAAAAGAAGAAGACCAATGGAGTTTGTTAG 1215 46.34 MQNRCVNMIAHLFNAPLGDSETAVGVGTVGSSEAIMLAGLAFKRKWQNRRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLREGYYVMDPEKAVELVDENTICVAAILGSTLNGEFEDVKLLNDLLIEKNKETGWDTPIHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYEGYQNVMENCKENMIVLKEGLERTGRFNIVSKDNGVPLVAFSLKDNTRHTEFEVSEMLRRFGWIVPAYTMPPDAQHITVLRVVIREDFSRTLAERLVTDIEKTLHELDSLPSRADIKMTVAGEETQKNDVVVAKKSALETQREITTVWRKFVMEKKKTNGVC 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9995233 9998160 + CcPI632755_01g009010.1 Cco01g0901 169763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0901 404 FunFam Glutamate decarboxylase 1 265 - -
Cco01g0901 404 Pfam Pyridoxal-dependent decarboxylase conserved domain 1 286 IPR002129 GO:0016830(InterPro)|GO:0019752(InterPro)|GO:0030170(InterPro)
Cco01g0901 404 Gene3D - 1 265 IPR015421 -
Cco01g0901 404 FunFam Glutamate decarboxylase 266 353 - -
Cco01g0901 404 Gene3D - 266 353 - -
Cco01g0901 404 PANTHER GLUTAMATE DECARBOXYLASE 1 404 IPR010107 GO:0004351(InterPro)|GO:0004351(PANTHER)|GO:0005829(PANTHER)|GO:0006536(InterPro)|GO:0006538(PANTHER)|GO:0030170(InterPro)
Cco01g0901 404 NCBIfam glutamate decarboxylase 1 349 IPR010107 GO:0004351(InterPro)|GO:0006536(InterPro)|GO:0030170(InterPro)
Cco01g0901 404 SUPERFAMILY PLP-dependent transferases 1 349 IPR015424 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0727 Cco-Chr1:7745288 Cco01g0901 Cco-Chr1:9995233 5.60E-43 dispersed
Cco01g0901 Cco-Chr1:9995233 Cco01g1862 Cco-Chr1:31156884 9.40E-187 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0901 K01580 - csv:101216119 805.823