Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0902 ATGGAGAAGGAGAATAATCAAAATCGTAGAGTTGGAGTAGCCATGGATTACTCTTCAACAAGCAAATCAGCTCTAAAATGGGCTGCAAATAATCTTCTTAGACATGGAGATCACTTAATTCTTATCCATGTTGAGTCTCCTAATTCTGATACTCCCACAAAGCTCCTCTTCCAACACACTGGCTCACCTTTGATTCCTTTTGAGGAATTTAGAGAGATTAAGTTGGAGAAGCAGTATGGATTGAGTAATGATGCAGAGGTTCTTGATATTCTTGACAAATTGGCTACGACTAAAGGGGTAAAAGTGATGGCTAAGGTTTATTGGGGTGATCCAAGGGAGAAGTTGTGTGAGGCTGTTGAGGATCTTAATCTTCATTCACTTGTTCTTGGGAGCAGAGGTTTAGGCTCTATCAAAAGGGTATTGCTTGGGAGTGTGAGCAACTATGTGGTGAAAAATGCTTCATGTCCAGTTACTGTGGTGAAAGGGAAACCATTGGCATTGCCAGACTCCAAATCTTAA 519 40.85 MEKENNQNRRVGVAMDYSSTSKSALKWAANNLLRHGDHLILIHVESPNSDTPTKLLFQHTGSPLIPFEEFREIKLEKQYGLSNDAEVLDILDKLATTKGVKVMAKVYWGDPREKLCEAVEDLNLHSLVLGSRGLGSIKRVLLGSVSNYVVKNASCPVTVVKGKPLALPDSKS 172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10010060 10011470 - CcPI632755_01g009020.1 Cco01g0902 169764

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0902 172 CDD USP_Like 10 160 - -
Cco01g0902 172 Gene3D HUPs 4 169 IPR014729 -
Cco01g0902 172 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 9 164 - -
Cco01g0902 172 Pfam Universal stress protein family 8 161 IPR006016 -
Cco01g0902 172 PANTHER IMP2'P 7 163 - -
Cco01g0902 172 FunFam Universal stress protein family protein 5 164 - -
Cco01g0902 172 PRINTS Universal stress protein signature 139 161 IPR006015 -
Cco01g0902 172 PRINTS Universal stress protein signature 121 133 IPR006015 -
Cco01g0902 172 PRINTS Universal stress protein signature 8 26 IPR006015 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0902 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0902 Cco-Chr1:10010060 Cco05g0769 Cco-Chr5:6392106 9.30E-43 dispersed
Cco01g0902 Cco-Chr1:10010060 Cco09g0563 Cco-Chr9:4932739 1.10E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g722 . . . . . . . . . . . . . . . . . . . . . . . . Cla01g00848 Cam01g0873 Cec01g0873 Cco01g0902 Clacu01g0864 Cmu01g0830 Cre09g1678 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014899 0 1 0 0 0 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 0 0 1 1 0 0 0 0 1 17