Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0907 ATGGCGTGCCGGAATCTCCTCCGGCTGTGTTTTTCATCTTTGGTGTTTCTTGTTTTCATATTCTTTCCTGTAGGAGAAGCAGAGGCTGATCTTGCGTCCGACACGGCGGCGCTGGTGGCGCTTCAGAAGGCCATGGGTGTTTTGAGCCGGACTCGCTATTGGAACCTCTCCGAGAAGACTCCATGTTTCTGGCTTGGCGTTACTTGCGGCGGTGGGAGGGTTACTGAACTGCGGCTTCCCGGCGTTGGTCTCGTCGGCCAACTTCCTTTAGGGCTTGGAAATTTAACTCAACTTGAAACCCTGTCTCTTCGCTCTAACATGCTTTCAGGTTCTATTCCGTCTGATTTTGCAAACCTCCGCTCCCTCCGGAACCTCTACTTGCAATGGAACTCGTTTTCCGGCGAGATTCCTCCGGTTCTGTTCAGTATTCAGAGTCTTGTTCGCCTGAATTTGGCCCACAACAAGTTCGTCGGTCCGATTTCATTAGGTTTCAATAATCTCACGAACCTACAGGTTCTCAATTTGGAAGAGAATCAACTCGATGGAATTGTTCCTGATTTGAACATTCCCTCGCTCAATGCTCTCAATGTTTCTTTCAATCGTCTCAATGGCTCTATCCCTTCGCGATTTTCCGATCAACCAGCCAATGCCTTCGATGGCAACTCGCTCTGCGGGAAGCCACTGAGCCCTTGCAACAGCGAGAAGAAGAAATTATCCGCTGGAGCAATCGCCGCAATCATTATCGGAAGTTTGATTGTATTCTTGCTTATCGTTCTGATTTTGATCTTTCTGTGCCGGAAGACGATCAAGATTAATCGGCCGAATGATGGTCAGACGATGGCGACAAGCTCCGGGAGATTGTCGTCGGAGGTCGAGAGTGCAGTTGACGGAAATAGAGGAGGTGGGAATGAGAGGAATTTGGTGTTCTGTAGGAAAGGAGAAAGTGTGTTTGATTTGGAGGAACTGTTGAAAGCTTCTGCAGAGGTATTAGGGAAAGGGAGTTTTGGGTCAACTTACAAGGCAGCTCTGGATGTGGGGATAACTGTGGTGGTTAAGAGGTTGAGAGATGTCAAAGTTTCAGAGGAGGAATTCAAGGAGAAGATTGAAAGCTTGGGGATGATGAATCATCAGAACTTAGTTCCTATTAAGGGTTACTATTATGGCAGAGATGAGAAGCTTCTGCTCTGTGATTATGTCTCCATGGGAAGCTTATCTGTACATTTACATGGCAACAAAGATCCTAGTAGGACTTCATTGAAATGGGAAGCAAGGGTTGGCATTGCGCTTGCAGCTGCTCGGGGGATTATGTATCTACATTCTCGACGACCTCCGACCTCTCATGGCAACATAAAGTCTTCAAACATTCTCCTCAACAGATCCCATACAGCTTGTGTCTCTGACTTTGGTCTCATTCAGATTGCAAGTCCTACATCCACTCCAAACCATGTTGCAACCTACCGCGCCCCTGAAGTCACTGATCCTCGTAAAGTATCCCTGAAAGCAGATGTTTACAGCTTTGGTGTGGTAATTCTAGAGCTTCTAACAGGGAAGGCTCTGAACTCAGCAATGCTCAATGACGATGGCGTAGACCTCCCACGATGGGTGCACTCGAAGATCGAAGAGGAGAAGACTGCTGAAGTGTTCGATGAGGAGCTATTAGAATACAAGAATGGCTTGGATGAAATGGTGCAACTTCTGCAACTTGCCATGTTATGTACAGCACCACACCCGGATAGTCGACCTACGATGGCGAAGGTGACGAGTCGAATCGATGAAATATATCATTCGATCTTACTGAAAGAACAAGATACGAGCATCGACAAGTTTTATGATGTGGACAGTACTGTTTCTCAGCAATTTTACTCAGCTGATTCAATCATGATTCCTCTTCCACCTTCGATCTAG 1905 46.93 MACRNLLRLCFSSLVFLVFIFFPVGEAEADLASDTAALVALQKAMGVLSRTRYWNLSEKTPCFWLGVTCGGGRVTELRLPGVGLVGQLPLGLGNLTQLETLSLRSNMLSGSIPSDFANLRSLRNLYLQWNSFSGEIPPVLFSIQSLVRLNLAHNKFVGPISLGFNNLTNLQVLNLEENQLDGIVPDLNIPSLNALNVSFNRLNGSIPSRFSDQPANAFDGNSLCGKPLSPCNSEKKKLSAGAIAAIIIGSLIVFLLIVLILIFLCRKTIKINRPNDGQTMATSSGRLSSEVESAVDGNRGGGNERNLVFCRKGESVFDLEELLKASAEVLGKGSFGSTYKAALDVGITVVVKRLRDVKVSEEEFKEKIESLGMMNHQNLVPIKGYYYGRDEKLLLCDYVSMGSLSVHLHGNKDPSRTSLKWEARVGIALAAARGIMYLHSRRPPTSHGNIKSSNILLNRSHTACVSDFGLIQIASPTSTPNHVATYRAPEVTDPRKVSLKADVYSFGVVILELLTGKALNSAMLNDDGVDLPRWVHSKIEEEKTAEVFDEELLEYKNGLDEMVQLLQLAMLCTAPHPDSRPTMAKVTSRIDEIYHSILLKEQDTSIDKFYDVDSTVSQQFYSADSIMIPLPPSI 634
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10064608 10067004 + CcPI632755_01g009070.1 Cco01g0907 169769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0907 634 FunFam Probable inactive receptor kinase RLK902 31 188 - -
Cco01g0907 634 FunFam pollen receptor-like kinase 1 293 398 - -
Cco01g0907 634 SMART LRR_typ_2 167 190 IPR003591 -
Cco01g0907 634 SMART LRR_typ_2 95 118 IPR003591 -
Cco01g0907 634 SMART LRR_typ_2 119 143 IPR003591 -
Cco01g0907 634 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 399 603 - -
Cco01g0907 634 Pfam Leucine rich repeat N-terminal domain 32 69 IPR013210 -
Cco01g0907 634 Gene3D Ribonuclease Inhibitor 188 235 IPR032675 -
Cco01g0907 634 Gene3D Phosphorylase Kinase; domain 1 294 398 - -
Cco01g0907 634 PANTHER OS05G0588300 PROTEIN 11 596 IPR050994 -
Cco01g0907 634 Pfam Leucine Rich Repeat 121 141 IPR001611 GO:0005515(InterPro)
Cco01g0907 634 Pfam Leucine Rich Repeat 97 119 IPR001611 GO:0005515(InterPro)
Cco01g0907 634 SUPERFAMILY L domain-like 46 212 - -
Cco01g0907 634 Gene3D Ribonuclease Inhibitor 32 187 IPR032675 -
Cco01g0907 634 SUPERFAMILY Protein kinase-like (PK-like) 328 588 IPR011009 -
Cco01g0907 634 ProSiteProfiles Protein kinase domain profile. 324 598 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco01g0907 634 ProSitePatterns Protein kinases ATP-binding region signature. 330 352 IPR017441 GO:0005524(InterPro)
Cco01g0907 634 Pfam Protein tyrosine and serine/threonine kinase 328 589 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco01g0907 634 Gene3D Transferase(Phosphotransferase) domain 1 399 603 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0907 Cco-Chr1:10064608 Cco05g1306 Cco-Chr5:13329979 1.10E-138 dispersed
Cco01g0907 Cco-Chr1:10064608 Cco01g1639 Cco-Chr1:29132530 9.10E-128 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86514 PF07714 PK_Tyr_Ser-Thr 6.80E-34 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0907 - - - 0.0