Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0954 ATGAAGACGGAGAATGGAAGGAAACAAGGAGGAACAGGAGCAGCGCCATGTGCAGCATGCAAGCTGCTGAGAAGAAGGTGTGGAGAGGAATGTGTATTTGCTCCATACTTTCCAGCAGACCAACCTCATAAGTTTGCCAATGTTCATAAGGTTTTTGGTGCTAGCAATGTCAACAAAATGCTCCAGGAGTTGCCAGTTCACCAACGTGGAGATGCAGTGAGCAGTTTGGTGTATGAAGCAAATGCTCGAGTGCGCGACCCGGTGTATGGGTGCGTCGGAGCAATATCGTCTCTGCAGCAGCAGATAGACACCCTCCAAACTCAGCTGGCTTTGGCTCAAGCCGAGGTGGTGCACCTAAGGGTGCGTCAGACAGCATCATTTTCAAACTATGGGCTAAGCCCAACAAGCCCAAGTAATAGTGGGTCACCCTCATCAAGGCTCATGGGCTCACAATCCAGGCCCATGTTTGAGATGGATATGGTTGTGGACCAAGCCATGGGAGACTCAATATGGTGA 516 50.39 MKTENGRKQGGTGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPVHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDTLQTQLALAQAEVVHLRVRQTASFSNYGLSPTSPSNSGSPSSRLMGSQSRPMFEMDMVVDQAMGDSIW 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10903808 10907412 + CcPI632755_01g009540.1 Cco01g0954 169816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0954 171 ProSiteProfiles LOB domain profile. 15 116 IPR004883 -
Cco01g0954 171 Pfam Lateral organ boundaries (LOB) domain 16 113 IPR004883 -
Cco01g0954 171 Coils Coil 95 122 - -
Cco01g0954 171 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 15 136 - -
Cco01g0954 171 MobiDBLite consensus disorder prediction 130 153 - -
Cco01g0954 171 MobiDBLite consensus disorder prediction 130 151 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0954 Cco-Chr1:10903808 Cco07g0478 Cco-Chr7:5715761 4.40E-45 dispersed
Cco01g0954 Cco-Chr1:10903808 Cco02g1984 Cco-Chr2:32785538 2.70E-58 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58611 PF03195 LOB 9.70E-44 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0954 - - - 0.0