Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0976 ATGGCCGCAAAAGACGCAGAGCAAGTCTTGGACGTGCAGTCGGTTGTCGAAGCAGTAGTTGCAAACGAAGACGCGGATGTTCCTAGCTACGAAGTAGAAAGCCTCTGCATGCGTTGCGGTGAAAACGGGACAACAAGATTTTTATTAACTTTAATTCCGCACTTCAGGAAGATCTTGTTGTCAGCCTTTGAATGTCTACATTGTGGTGAGAGGAACAATGAAGTCCAGTTTGCTGGTGAGATCCAGCCACGAGGCTGTTGCTACTGTTTGGAGGTTCATGCAAGCGACCAGAAGATGCTCAATCGACAAGTGGTAAAATCTGAATCTGCCATTATTAAGATCCCAGAATTGGATTTTGAGATTCCAGCAGAGGCTCAACGTGGAACTCTATCAACTCCTTGA 402 46.02 MAAKDAEQVLDVQSVVEAVVANEDADVPSYEVESLCMRCGENGTTRFLLTLIPHFRKILLSAFECLHCGERNNEVQFAGEIQPRGCCYCLEVHASDQKMLNRQVVKSESAIIKIPELDFEIPAEAQRGTLSTP 133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11554757 11558698 + CcPI632755_01g009760.1 Cco01g0976 169838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0976 133 SMART zpr1 34 133 IPR004457 GO:0008270(InterPro)
Cco01g0976 133 Pfam ZPR1 zinc-finger domain 31 83 IPR004457 GO:0008270(InterPro)
Cco01g0976 133 Gene3D ZPR1, A/B domain 80 132 IPR042451 -
Cco01g0976 133 PANTHER ZINC FINGER PROTEIN ZPR1 7 132 IPR040141 GO:0005634(PANTHER)|GO:0005737(PANTHER)
Cco01g0976 133 FunFam Zinc finger protein ZPR1 24 79 - -
Cco01g0976 133 Pfam ZPR1 jelly-roll domain 99 132 - -
Cco01g0976 133 Gene3D ZPR1, zinc finger domain 26 79 IPR042452 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0976 Cco-Chr1:11554757 Cco01g0978 Cco-Chr1:11567905 3.60E-10 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0976 K06874 - csv:101208000 251.136