Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0978 ATGAGCTCTCATGTTTATGTGAAATTTCTGTTGGTGGGTGGGAGGCACTCTATCTTGTCGTGTGATGAGTTTTTCACACACTCAGTGGAAGGTATATTGGTACGAGCCGCAGATGAATTAGAAGCCCTTCAAGAGGAACGTAGGAAGGTGGATCCTCAGACTGCTGAAGCAATAGACCAGTTTCTCCTGAAACTGAAAGCTTGTGCCATGGGAGATTCATCATTCTCCTTCATCTTGGATGATCCAGCTGGAAACAGCTTCATTGAGAACCCATTTGCACCAGCTAAAGATCCATCATTAAGCATCAAGTTTTATGAGCGGACTCCAGAACAACAAGCATCGTTGGGTTATTACGTTGAACCATCACAACCAGCAGAAGCTGAGGATGGAGCATCAACAGGTGGAGTTGATGCTTCTAATCAAGTTAGAGGAGAGGCACATGGATCTGTAGGAGCAACGGCTGGCCATCGGGCAATAGCTCAAAGTAACAGTGCAGAGATTGCTGAGGCCTTGTTTCGTTACACTGCACCAGAAGAAGTGATGACTTTCCCATCAACATGTGGAGCTTGTGCAGTTAGGTGTGAGACTCGAATGTTTGTAACCAAAATTCCCTACTTCCAAGAAGTGATTGTCATGGCAACTACTTGTGATGCTTGTGGTTACCGTAGTTCTGAGCTGAAGCCTGGAGGGCGAATCCCTGAAAAAGGAAAGATAATTAGTCTTTGTGTGAAGGATGTTAGAGATCTCAGTCGAGATGTGATAAAGTCAGATACTGCAAGTGTAAAAGTCCCAGATCTTGACTTGGAGCTGACTAGTGGCACTCTTGGGGGAATTGTTACAACTGTCGAAGGTTTAATCACAAAGATAAGTGAAAGTCTTGAGAGAGTACATGGATTTACTTTTGGAGACAGTCTTGATGAAAATAGAAGAAACAAATGGTTGGACTTCAAAACAAGACTAACCAAGCTCTTGAGTTTGGAACAGCCTTGGACTCTCATCCTTGATGATGCACTAGCAAATTCGTTTATTGCACCAGTGACTGATGATATGAAAGATGACCATCAGTTAACATGCGAGGAATACGAGAGATCCTGGGAACAGAATGAGGAACTTGGTTTGAACGACATGGACACTTCGGCCGCTGATGCTGCATATAATTAA 1161 43.76 MSSHVYVKFLLVGGRHSILSCDEFFTHSVEGILVRAADELEALQEERRKVDPQTAEAIDQFLLKLKACAMGDSSFSFILDDPAGNSFIENPFAPAKDPSLSIKFYERTPEQQASLGYYVEPSQPAEAEDGASTGGVDASNQVRGEAHGSVGATAGHRAIAQSNSAEIAEALFRYTAPEEVMTFPSTCGACAVRCETRMFVTKIPYFQEVIVMATTCDACGYRSSELKPGGRIPEKGKIISLCVKDVRDLSRDVIKSDTASVKVPDLDLELTSGTLGGIVTTVEGLITKISESLERVHGFTFGDSLDENRRNKWLDFKTRLTKLLSLEQPWTLILDDALANSFIAPVTDDMKDDHQLTCEEYERSWEQNEELGLNDMDTSAADAAYN 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11567905 11578400 + CcPI632755_01g009780.1 Cco01g0978 169840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0978 386 SMART zpr1 185 345 IPR004457 GO:0008270(InterPro)
Cco01g0978 386 FunFam Zinc finger protein ZPR1 231 373 - -
Cco01g0978 386 Gene3D ZPR1, A/B domain 231 373 IPR042451 -
Cco01g0978 386 Gene3D ZPR1, A/B domain 22 117 IPR042451 -
Cco01g0978 386 PANTHER ZINC FINGER PROTEIN ZPR1 28 383 IPR040141 GO:0005634(PANTHER)|GO:0005737(PANTHER)
Cco01g0978 386 FunFam Zinc finger protein ZPR1 176 230 - -
Cco01g0978 386 NCBIfam ZPR1 zinc finger domain 186 377 IPR004457 GO:0008270(InterPro)
Cco01g0978 386 Gene3D ZPR1, zinc finger domain 175 230 IPR042452 -
Cco01g0978 386 Pfam ZPR1 jelly-roll domain 248 373 - -
Cco01g0978 386 Pfam ZPR1 jelly-roll domain 28 117 - -
Cco01g0978 386 Pfam ZPR1 zinc-finger domain 179 234 IPR004457 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0976 Cco-Chr1:11554757 Cco01g0978 Cco-Chr1:11567905 3.60E-10 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0978 K06874 - csv:101208000 675.241