Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0992 ATGGCTAACTTTTCAAAACCCCATTATGATGCTGATCCAAGGGCCGTAGAAACTATCAAGGGCTGCAGAACTGTATTTTATCCGAGAGCATTCAACATCACATGGGGCAATGACAATCGCTATTGGCGTTTTCCTCGTCAAAGCATTAATTTGAAGGACCCAAAATCAGCTGTGCAACTATTGCAAGTGAGTTGGCTAGAAGTGACTTGTTCAACAGACAATGTGGAGGCTGGCAAGACCTATAAAGTGGGCTTCAATGTATCACTTCAACCAGATGCATTTGGGTGGAATGAGCTTGAAGTTTTCATAATGGCCAAGGTTGGAAGAAAGGGAAACTACATTTTCAAGAAGACTAATCTTGGGAACAAACCTACAAACTCTACGAAGTTTAGTGTTCCCAAGGAGGGTTTGGAAATGGAAGTTGTTGCACCACCAAGCTCCCCAGGAGATTGCAGGCTCTATTTTGGACTTTATGAAGTTTGGAGTGGCAAATGGAAGGGAGGCCTGCAGATTCATAATGCTTTTGTTGAGAAAGTTTGA 540 42.78 MANFSKPHYDADPRAVETIKGCRTVFYPRAFNITWGNDNRYWRFPRQSINLKDPKSAVQLLQVSWLEVTCSTDNVEAGKTYKVGFNVSLQPDAFGWNELEVFIMAKVGRKGNYIFKKTNLGNKPTNSTKFSVPKEGLEMEVVAPPSSPGDCRLYFGLYEVWSGKWKGGLQIHNAFVEKV 179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12188218 12189631 + CcPI632755_01g009920.1 Cco01g0992 169854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0992 179 Pfam Phloem protein 2 25 173 IPR025886 -
Cco01g0992 179 PANTHER F-BOX DOMAIN-CONTAINING PROTEIN 23 174 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0981 Cco-Chr1:11642342 Cco01g0992 Cco-Chr1:12188218 1.50E-48 dispersed
Cco01g0983 Cco-Chr1:11685047 Cco01g0992 Cco-Chr1:12188218 2.00E-46 dispersed
Cco01g0989 Cco-Chr1:12053945 Cco01g0992 Cco-Chr1:12188218 9.80E-22 dispersed
Cco01g0992 Cco-Chr1:12188218 Cco04g2379 Cco-Chr4:37190861 2.90E-31 dispersed
Cco01g0991 Cco-Chr1:12153315 Cco01g0992 Cco-Chr1:12188218 1.10E-65 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0992 - - - 0.0